Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100383
Name   oriT_pSS-03 in_silico
Organism   Staphylococcus arlettae
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_016054 (5688..5728 [-], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTG|CTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 41 nt

>oriT_pSS-03
CACTTTATGGATATAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   454 GenBank   YP_004888092
Name   Mob_pSS-03 insolico UniProt ID   _
Length   376 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 376 a.a.        Molecular weight: 44646.69 Da        Isoelectric Point: 9.4531

>YP_004888092.1 putative delta recombination/mobilization protein (plasmid) [Staphylococcus arlettae]
MDIKYSVLYFTWKLTEIRGRVFVSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPDREHLNYDLLH
QEKIDYNQQVKAIIESQKVSERKTRKDAVLVNELLVTSDRKFFDGLDPAEQKRFFEESHKLFSERYGKQN
IAYATVHNDEKTPHMHLGVVPMRDGKLQGKNVFNRQELQWMQEEFPKHMQSVGFEVERGIASDRKHIEMS
RFKALTLNEEIKTLEKETEALRNALTASKKVDELQVTKPSLFDRNHVKLPVEDFEALKARAKATEAIERT
IEAHEKRFDDMVDNVIDSDRKLDQEKRKTAQLQKENNGLKKENLDLQKENKTLKSQLNVLMEFAKSQLEK
FKEWQKERQQEKENNIARKRDQELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(25-214)


  Protein structure



No available structure.




Host bacterium

ID   844 GenBank   NC_016054
Plasmid name   pSS-03 Incompatibility group   _
Plasmid size   7122 bp Coordinate of oriT [Strand]   5688..5728 [-]
Host baterium   Staphylococcus arlettae

Cargo genes

Drug resistance gene   cfr, erm(C)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -