Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100381
Name   oriT_pM7M2 in_silico
Organism   Enterococcus faecium
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_016009 (5031..5068 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 38 nt

>oriT_pM7M2
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   452 GenBank   YP_004849396
Name   Mob_pM7M2 insolico UniProt ID   _
Length   420 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 420 a.a.        Molecular weight: 49660.33 Da        Isoelectric Point: 9.9693

>YP_004849396.1 putative plasmid recombination/mobilization protein (plasmid) [Enterococcus faecium]
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTR
KTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   842 GenBank   NC_016009
Plasmid name   pM7M2 Incompatibility group   _
Plasmid size   19557 bp Coordinate of oriT [Strand]   5031..5068 [+]
Host baterium   Enterococcus faecium

Cargo genes

Drug resistance gene   tet(M), tet(L)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -