Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   100380
Name   oriT_pGB2001 in_silico
Organism   Streptococcus agalactiae
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_015973 (1010..1048 [-], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      3..10, 14..20  (ACATTTAC..GTAAAGT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site  
 
 GCG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 39 nt

>oriT_pGB2001
GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   451 GenBank   YP_004831119
Name   Mob_pGB2001 insolico UniProt ID   G3ER43
Length   500 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 500 a.a.        Molecular weight: 58463.75 Da        Isoelectric Point: 6.0256

>YP_004831119.1 plasmid mobilization protein (plasmid) [Streptococcus agalactiae]
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI

  Protein domains


Predicted by InterproScan.

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB G3ER43


Host bacterium


ID   841 GenBank   NC_015973
Plasmid name   pGB2001 Incompatibility group   _
Plasmid size   4967 bp Coordinate of oriT [Strand]   1010..1048 [-]
Host baterium   Streptococcus agalactiae

Cargo genes


Drug resistance gene   erm(T)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -