Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 100380 |
Name | oriT_pGB2001 |
Organism | Streptococcus agalactiae |
Sequence Completeness | core |
NCBI accession of oriT (coordinates [strand]) | NC_015973 (1010..1048 [-], 39 nt) |
oriT length | 39 nt |
IRs (inverted repeats) | 3..10, 14..20 (ACATTTAC..GTAAAGT) |
Location of nic site | 28..29 |
Conserved sequence flanking the nic site |
GCG|TTA |
Note | predicted by the oriTfinder |
oriT sequence
Download Length: 39 nt
>oriT_pGB2001
GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTAC
GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 451 | GenBank | YP_004831119 |
Name | Mob_pGB2001 | UniProt ID | G3ER43 |
Length | 500 a.a. | PDB ID | |
Note | putative relaxase |
Relaxase protein sequence
Download Length: 500 a.a. Molecular weight: 58463.75 Da Isoelectric Point: 6.0256
>YP_004831119.1 plasmid mobilization protein (plasmid) [Streptococcus agalactiae]
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI
Protein domains
Predicted by InterproScan.
Protein structure
Source | ID | Structure |
---|---|---|
AlphaFold DB | G3ER43 |
Host bacterium
ID | 841 | GenBank | NC_015973 |
Plasmid name | pGB2001 | Incompatibility group | _ |
Plasmid size | 4967 bp | Coordinate of oriT [Strand] | 1010..1048 [-] |
Host baterium | Streptococcus agalactiae |
Cargo genes
Drug resistance gene | erm(T) |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |