Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100372
Name   oriT_p157F-NC1 in_silico
Organism   Bifidobacterium longum subsp. infantis 157F
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_015053 (4618..4652 [-], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      4..11, 15..22  (ATGTTACC..GGTAACAT)
Location of nic site      31..32
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 35 nt

>oriT_p157F-NC1
TGAATGTTACCACCGGTAACATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   443 GenBank   WP_012477134
Name   MobA_p157F-NC1 insolico UniProt ID   E8MXD2
Length   370 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 370 a.a.        Molecular weight: 42014.41 Da        Isoelectric Point: 10.0187

>WP_012477134.1 MULTISPECIES: MobA/MobL family protein [Bacteria]
MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVEMAEKRSDARPAKKIMVALPREFDAR
ERFRALEDFISWNITANGYACTYAIHTDKDGRNPHAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIP
VIDPDTGRQKIGARNRKVWKRVNVSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIP
TIHEGYASREMEKRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSS
PEPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEPDMEETWDLSD
PADPLNIGMGWGTGGHGLGL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(1-224)


  Protein structure


Source ID Structure
AlphaFold DB E8MXD2


Host bacterium

ID   833 GenBank   NC_015053
Plasmid name   p157F-NC1 Incompatibility group   _
Plasmid size   4895 bp Coordinate of oriT [Strand]   4618..4652 [-]
Host baterium   Bifidobacterium longum subsp. infantis 157F

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -