Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100357 |
| Name | oriT_pSN11/00Kan  |
| Organism | Salmonella enterica subsp. enterica serovar Newport |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NC_014003 (990..1072 [-], 83 nt) |
| oriT length | 83 nt |
| IRs (inverted repeats) | 3..12, 16..25 (GTGTCGGGGC..GCCCTGACCC) |
| Location of nic site | 56..57 |
| Conserved sequence flanking the nic site |
CTGG|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 83 nt
>oriT_pSN11/00Kan
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACTATGTGGCATCAGTGCGGATT
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACTATGTGGCATCAGTGCGGATT
Visualization of oriT structure
Relaxase
| ID | 428 | GenBank | YP_003543173 |
| Name | MobA_pSN11/00Kan |
UniProt ID | D5I152 |
| Length | 529 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 529 a.a. Molecular weight: 59863.49 Da Isoelectric Point: 9.8459
>YP_003543173.1 MobA (plasmid) [Salmonella enterica subsp. enterica serovar Newport]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEIRELIDATPFSKKYTSGVLSFAEKELPPGER
ERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRINAWQTLVN
HHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEALYRAGAIKTRQDVTEALTAAGFEVVRTTRS
SISIADPEGGRNLRLKGALYEQSFTNGNGLREETERASRFYREHAEQRVQEARRVCRQGTELKQAENQRR
YQRTYNIRETATGYAEHHREHAAQHHRGRTVPAAEKPALAGDQRAGTVSGADRAQRHGRHFPGVLGADSV
AGKQDCEKYLDHQRAGKHAGETRGKNLGGDVRQWREREISGAAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRRIAEDARGYATEQRDTERACRELESAGAAISRTSRPLESVI
YHEQQIRDEQERQAQELARRWHEEQEPEARIWRGPSMGM
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEIRELIDATPFSKKYTSGVLSFAEKELPPGER
ERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRINAWQTLVN
HHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEALYRAGAIKTRQDVTEALTAAGFEVVRTTRS
SISIADPEGGRNLRLKGALYEQSFTNGNGLREETERASRFYREHAEQRVQEARRVCRQGTELKQAENQRR
YQRTYNIRETATGYAEHHREHAAQHHRGRTVPAAEKPALAGDQRAGTVSGADRAQRHGRHFPGVLGADSV
AGKQDCEKYLDHQRAGKHAGETRGKNLGGDVRQWREREISGAAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRRIAEDARGYATEQRDTERACRELESAGAAISRTSRPLESVI
YHEQQIRDEQERQAQELARRWHEEQEPEARIWRGPSMGM
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | D5I152 |
Host bacterium
| ID | 818 | GenBank | NC_014003 |
| Plasmid name | pSN11/00Kan | Incompatibility group | ColRNAI |
| Plasmid size | 5698 bp | Coordinate of oriT [Strand] | 990..1072 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Newport |
Cargo genes
| Drug resistance gene | aph(3')-Ia |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |