Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100347
Name   oriT_SAP106B in_silico
Organism   Staphylococcus epidermidis
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_013380 (882..1119 [+], 238 nt)
oriT length   238 nt
IRs (inverted repeats)      IR1: 1..8, 14..21  (AGTGGCTA..TTGCCACT)
  IR2: 25..31, 36..42  (TTTTTGC..GCAAAAA)
  IR3: 94..98, 104..108  (TGGAT..AGCCA)
Location of nic site      115..116
Conserved sequence flanking the
  nic site    		  TGCTTG|CCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 238 nt

>oriT_SAP106B
AGTGGCTAGCATTTTGCCACTCATTTTTTGCGTTAGCAAAAACATAAAGGGTATGGGATATAATCCCATCAAGTACGGCGTGCTAGAACGAAGTGGATAGCAAAGCCAATGCTTGCCAAACCACATAACGACTTGATAAATTTTGCTTTACCCTGTAAAGTAAAATTATATTAAGGAGTTATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAACACATTTGTGGCTAGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   418 GenBank   YP_006939092
Name   Rlx_SAP106B insolico UniProt ID   D2JCA3
Length   336 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 38445.19 Da        Isoelectric Point: 6.8838

>YP_006939092.1 rlx protein, putative (plasmid) [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCMEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTSKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-242)


  Protein structure


Source ID Structure
AlphaFold DB D2JCA3


Host bacterium

ID   808 GenBank   NC_013380
Plasmid name   SAP106B Incompatibility group   _
Plasmid size   8435 bp Coordinate of oriT [Strand]   882..1119 [+]
Host baterium   Staphylococcus epidermidis

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -