Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   100344
Name   oriT_pO26_3 in_silico
Organism   Escherichia coli O26:H11 str. 11368
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_013363 (5519..5601 [-], 83 nt)
oriT length   83 nt
IRs (inverted repeats)      3..12, 16..25  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site      56..57
Conserved sequence flanking the
  nic site  
 
 CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 83 nt

>oriT_pO26_3
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTACTTATTCGGCATCAGGGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   415 GenBank   WP_000635796
Name   Nuclease_pO26_3 insolico UniProt ID   _
Length   517 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 517 a.a.        Molecular weight: 57810.31 Da        Isoelectric Point: 6.0801

>WP_000635796.1 nuclease [Escherichia coli]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRILTLPDNLPKTKQALAESVTRGIDALYHVGEIKGRQDVIQALTEAGIEVVRVTRS
SISIAGPNGGRNIKLKGAFYEQSFTDGRGVREKAERESRIYRENAEQRVQEARRVCQRGCDLKRDENQRR
YSPVHSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWRDALVSWREDTGEPGRN
QEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQE
REHVLSLERERQPEIQERTLDGPSLGW

  Protein domains


Predicted by InterproScan.

(57-237)


  Protein structure



No available structure.




Host bacterium


ID   805 GenBank   NC_013363
Plasmid name   pO26_3 Incompatibility group   ColRNAI
Plasmid size   5686 bp Coordinate of oriT [Strand]   5519..5601 [-]
Host baterium   Escherichia coli O26:H11 str. 11368

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -