Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 100344 |
Name | oriT_pO26_3 |
Organism | Escherichia coli O26:H11 str. 11368 |
Sequence Completeness | intact |
NCBI accession of oriT (coordinates [strand]) | NC_013363 (5519..5601 [-], 83 nt) |
oriT length | 83 nt |
IRs (inverted repeats) | 3..12, 16..25 (GTGTCGGGGC..GCCCTGACCC) |
Location of nic site | 56..57 |
Conserved sequence flanking the nic site |
CTGG|CTTA |
Note | predicted by the oriTfinder |
oriT sequence
Download Length: 83 nt
>oriT_pO26_3
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTACTTATTCGGCATCAGGGCGCATT
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTACTTATTCGGCATCAGGGCGCATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 415 | GenBank | WP_000635796 |
Name | Nuclease_pO26_3 | UniProt ID | _ |
Length | 517 a.a. | PDB ID | |
Note | putative relaxase |
Relaxase protein sequence
Download Length: 517 a.a. Molecular weight: 57810.31 Da Isoelectric Point: 6.0801
>WP_000635796.1 nuclease [Escherichia coli]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRILTLPDNLPKTKQALAESVTRGIDALYHVGEIKGRQDVIQALTEAGIEVVRVTRS
SISIAGPNGGRNIKLKGAFYEQSFTDGRGVREKAERESRIYRENAEQRVQEARRVCQRGCDLKRDENQRR
YSPVHSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWRDALVSWREDTGEPGRN
QEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQE
REHVLSLERERQPEIQERTLDGPSLGW
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRILTLPDNLPKTKQALAESVTRGIDALYHVGEIKGRQDVIQALTEAGIEVVRVTRS
SISIAGPNGGRNIKLKGAFYEQSFTDGRGVREKAERESRIYRENAEQRVQEARRVCQRGCDLKRDENQRR
YSPVHSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWRDALVSWREDTGEPGRN
QEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQE
REHVLSLERERQPEIQERTLDGPSLGW
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
ID | 805 | GenBank | NC_013363 |
Plasmid name | pO26_3 | Incompatibility group | ColRNAI |
Plasmid size | 5686 bp | Coordinate of oriT [Strand] | 5519..5601 [-] |
Host baterium | Escherichia coli O26:H11 str. 11368 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |