Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100305
Name   oriT_pB80 in_silico
Organism   Bifidobacterium bifidum
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_011332 (2397..2431 [+], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      4..11, 15..22  (ATGTTACC..GGTAACAT)
Location of nic site      31..32
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 35 nt

>oriT_pB80
TGAATGTTACCACCGGTAACATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   376 GenBank   YP_002265641
Name   MobA_pB80 insolico UniProt ID   Q2PRN8
Length   370 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 370 a.a.        Molecular weight: 42014.41 Da        Isoelectric Point: 10.0187

>YP_002265641.1 MobA (plasmid) [Bifidobacterium bifidum]
MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVEMAEKRSDARPAKKIMVALPREFDAR
ERFRALEDFISWNITANGYACTYAIHTDKDGRNPHAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIP
VIDPDTGRQKIGARNRKVWKRVNVSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIP
TIHEGYASREMEKRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSS
PEPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEPDMEETWDLSD
PADPLNIGMGWGTGGHGLGL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(1-224)


  Protein structure


Source ID Structure
AlphaFold DB Q2PRN8


Host bacterium

ID   767 GenBank   NC_011332
Plasmid name   pB80 Incompatibility group   _
Plasmid size   4898 bp Coordinate of oriT [Strand]   2397..2431 [+]
Host baterium   Bifidobacterium bifidum

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -