Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100304
Name   oriT_pSL491_5 in_silico
Organism   Salmonella enterica subsp. enterica serovar Virchow str. SL491
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_011214 (587..674 [-], 88 nt)
oriT length   88 nt
IRs (inverted repeats)      8..17, 21..30  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site      61..62
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 88 nt

>oriT_pSL491_5
TCAGGGGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAACTATGCGACATCAGTGCGGATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   375 GenBank   WP_000635804
Name   Nuclease_pSL491_5 insolico UniProt ID   _
Length   517 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 517 a.a.        Molecular weight: 57794.27 Da        Isoelectric Point: 6.0811

>WP_000635804.1 MULTISPECIES: nuclease [Enterobacteriaceae]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRTLTLPDNLPETKQALAEGVTRGIDALYHAGEIKGRQDVIQALTEAGLEVVRVTRS
SISIADPNGGKNIRLKGAFYEQSFADGRGVREKAERESRIYRENAEQRVQEARRICKRGCDIKRDENQRR
YSPVHSLDRGIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYREWRDALVSWREDTGEPGRN
QEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQE
REHVLSLERERQPEIQERTLDGPSLGW

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-237)


  Protein structure



No available structure.




Host bacterium

ID   766 GenBank   NC_011214
Plasmid name   pSL491_5 Incompatibility group   ColRNAI
Plasmid size   5880 bp Coordinate of oriT [Strand]   587..674 [-]
Host baterium   Salmonella enterica subsp. enterica serovar Virchow str. SL491

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -