Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100298
Name   oriT_pYSI8 in_silico
Organism   Latilactobacillus sakei
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_010936 (3606..3644 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 39 nt

>oriT_pYSI8
CTTTACGAATGTAAAGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   369 GenBank   YP_001967741
Name   Mob_pYSI8 insolico UniProt ID   A8VYA9
Length   403 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 403 a.a.        Molecular weight: 46930.81 Da        Isoelectric Point: 9.0583

>YP_001967741.1 mobilization protein (plasmid) [Lactobacillus sakei]
MSFVVARMQKMKAGNLVGIGNHNQRLTDNHSNKDIDTERSYLNYDLVNRTDNYKTDIQQFINDNKSSSRA
VRKDAVLINEWIITSDNQFFKDKDDKEIKDFFDTAKSYFADKFGDNNIRYAQVHLDETTPHMHLGIVPFN
AEKRLSAKTLFNRQALQAVQDELPKYLNERGFELERGEKGSERKNLTVPEYKKAKDELKEMTTTLEQRKS
EVLALSNDKTPTINKESLDLKDETKTVKVPSGETIGIGKLRHEFTKNEERKTGNVIIPEDKLNALIQGYE
DLYKSNEKLKKYAETDLPKRINYVKEKYKEVVREYNDLADRFNNNLEKIDSLEKENKSLKNEIKGIYRGF
NQFMENTLGATVGQAKKLMNNLVSEIKEFVKGGEFEKIHRNETRTRDRDELSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure


Source ID Structure
AlphaFold DB A8VYA9


Host bacterium

ID   760 GenBank   NC_010936
Plasmid name   pYSI8 Incompatibility group   _
Plasmid size   4973 bp Coordinate of oriT [Strand]   3606..3644 [+]
Host baterium   Latilactobacillus sakei

Cargo genes

Drug resistance gene   lnu(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -