Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 100294
• Name: oriT_p6043B
• Organism: Bifidobacterium longum
• Sequence Completeness: core
• NCBI accession of oriT (coordinates [strand]): NC_010861 (192..223 [-], 32 nt)
• oriT length: 32 nt
• IRs (inverted repeats): 1..8, 12..19 (ATGCAACC..GGTTGCAT)
• Location of nic site: 28..29
• Conserved sequence flanking the nic site: TAAGTGCG|CCCT
• Note: predicted by the oriTfinder

oriT sequence

• Length: 32 nt

>oriT_p6043B
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Mob_p6043B

• ID: 365
• GenBank: YP_001965376
• Name: Mob_p6043B
• UniProt ID: A0ES92
• Length: 564 a.a.
• Note: putative relaxase

Relaxase protein sequence

• Length: 564 a.a.
• Molecular weight: 64292.66 Da
• Isoelectric Point: 9.9003

>YP_001965376.1 Mob (plasmid) [Bifidobacterium longum]
MAIYHLSVSNVSRASGSKATATLSYISGRRVHDERRGETYDYGRKERVLRVGTLLPEGAPAEYADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHDDGRGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWANTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAE
LGRIFDRLGELFAAKIGRLRRRQARPEPAAPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNRE
EWWRSHGTEEHEAAKQIIDVARAASREARDANIFKRGRLLRNAEQVAGEQSERLRGAVPWLEDADIPADW
DQANRFRMRTTKAIYDHDMQPRTRLVAELERRLEQAERAESERPSPEQVKALALRMAEQRAQAENPTQDT
KRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADLLNEIRQRTDRLTGQREAEQRQIDPWSAQPPQRR
GHGR

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (19-253)

Protein structure

• AlphaFold DB: A0ES92

Host bacterium

• ID: 756
• GenBank: NC_010861
• Plasmid name: p6043B
• Incompatibility group: _
• Plasmid size: 3680 bp
• Coordinate of oriT [Strand]: 192..223 [-]
• Host baterium: Bifidobacterium longum

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -