Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100286
Name   oriT_pTZ4 in_silico
Organism   Staphylococcus aureus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_010111 (3101..3153 [+], 53 nt)
oriT length   53 nt
IRs (inverted repeats)      12..19, 35..42  (GTATATTC..GAATATAC)
Location of nic site      50..51
Conserved sequence flanking the
  nic site    		  CGCTTG|CCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 53 nt

>oriT_pTZ4
CCATCAAGCCGGTATATTCAGAACGAAGTGGCTAGAATATACGACGCTTGCCA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   357 GenBank   YP_001595587
Name   pTZ4_p3_pTZ4 insolico UniProt ID   A9CQY2
Length   315 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 315 a.a.        Molecular weight: 36445.26 Da        Isoelectric Point: 7.3757

>YP_001595587.1 hypothetical protein pTZ4_p3 (plasmid) [Staphylococcus aureus]
MATTKLGNTKSASRAINYAEKRAEEKSGLNCDVDYAKSAFKQTRALYGKEDGIQAHTVIQSFKPGEVTPE
QCNQLGLELAEKIAPNHQVAVYTHTDKDHYHNHIVINSVDLETGKKYQSNKKQRDLVKKENDNICREHGL
SVTERGIAKMRYTQAEKGIVFDRDEYSWKDELRDLIENAKTHTSNLETFSEHLEEKGVGVKLRGETISYK
PENENKWVRGRTLGSEYEKGAIDHEHERHQKQQREPEYADEFKINWDAVEQHTEQLKQRRVERAQETKQA
HSKISSRDTRESENQRERAKGNNIRIERGDEGLSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(8-238)


  Protein structure


Source ID Structure
AlphaFold DB A9CQY2


Host bacterium

ID   748 GenBank   NC_010111
Plasmid name   pTZ4 Incompatibility group   _
Plasmid size   4555 bp Coordinate of oriT [Strand]   3101..3153 [+]
Host baterium   Staphylococcus aureus

Cargo genes

Drug resistance gene   cat(pC221)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -