Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100265
Name   oriT_pRB2256-F in_silico
Organism   Sphingopyxis alaskensis RB2256 F
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_008036 (4711..4746 [-], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      15..20, 24..29  (ACGTCG..CGACGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 36 nt

>oriT_pRB2256-F
GAGGGCGCGCTTATACGTCGTGCCGACGTGGCGTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   336 GenBank   WP_041384243
Name   TraA_pRB2256-F insolico UniProt ID   _
Length   961 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 961 a.a.        Molecular weight: 106259.86 Da        Isoelectric Point: 9.8496

>WP_041384243.1 MULTISPECIES: Ti-type conjugative transfer relaxase TraA [Sphingomonadaceae]
MAIFHFSAKVIGRSSGRSAVAAAAYRAGEQLHDERIDRTHDFTNKAGVLHSEVMLPKGAPEALADRATLW
NAVEAAEKRKDAQLAREVEFALPRELSKKDNIRLAREFVKAEFVEKGMIADLNVHWDIGEDGKAKPHAHV
MLTMREVTKDGFGAKVRDWNKTALIEQWRERWADHVNRALAERDIDTRIDHRSLEAQGIALEPQDKIGPA
ASRIGGRGLEAERIEEHRAIAQRNGERIIANPSLALDAITHQQATFTRRDLAAFVHRHSDGKEQFDAAYN
AVRAAPELIALGKDGRGQDRFTSRAMIETEQRLHCAADAMAQRAGHAVNDVQRNAAFASAAKRGLVLSGE
QKSAFEYVTKKGGLAVIVGYAGTGKSAMLGVAREAWESAGYNVRGAALSGITAEGLENGSGIASRTIASL
EHQWGKGCEQLTAKDVLVIDEAGMVGTRQMERVLSHAAKSSAKLVLVGDQQQLQAIEAGAAFRAIHERHG
GVEISEVRRQLSAWQQDTTRQLATGRTGEAIRTYEERGMVYATDTREVARTELVERWDRERQDSPDERRI
ILTHTNDEVRELNQMAREKMRVAGALGADATIKAARGERKFASGDRIIFLRNERELGVKNGTLGTVAMSS
PQRMAVRTDDGREVAFDTKYYAHIDHGYAATIHKAQGMTVDRTHILATPGMDSHSAYVAMSRHREGLALH
YGRDDFADQSKLVRTLSRERGKDMAGDYKPEQAFAELRGISFRERVMAMVRQVPEKAKSIFGNFRPQARQ
LEPLPAKSNTQNDQRRAVERYARALGDIGTMQAQGLPVLPHQKDALEKAGKALDAIRPHAATDLAKALER
RPELIPEAAGGRSQEAMRAMNQEAAVRTDPALRSERFVSDWQGLSTARKQLEQQGDRAGAVRVSAKQNEL
AKSLERDPQVEGLLRGKTRELGIDPKPERSIAKELTATLARERTRAFDMGI

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-214)

AAA domain (AAA_30)

(347-534)


  Protein structure



No available structure.




Host bacterium

ID   727 GenBank   NC_008036
Plasmid name   pRB2256-F Incompatibility group   _
Plasmid size   28543 bp Coordinate of oriT [Strand]   4711..4746 [-]
Host baterium   Sphingopyxis alaskensis RB2256 F

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -