Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100262
Name   oriT_pSES22 in_silico
Organism   Staphylococcus saprophyticus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_007621 (2547..2587 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 41 nt

>oriT_pSES22
CACTTTATGGATATAAAGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   333 GenBank   YP_415518
Name   Mob_pSES22 insolico UniProt ID   Q2YHL4
Length   420 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 420 a.a.        Molecular weight: 49688.21 Da        Isoelectric Point: 9.7839

>YP_415518.1 recombination-mobilization protein (plasmid) [Staphylococcus saprophyticus]
MSYAVCRMQKVKSAGLKGMQFHNQRERESRTNEDIDRERTHENYDLQNDENINYNERVKDIIDSQKTGTR
KTRKDAVLVNELLVTSDRDFFERLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKNVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DKLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDQIKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure


Source ID Structure
AlphaFold DB Q2YHL4


Host bacterium

ID   724 GenBank   NC_007621
Plasmid name   pSES22 Incompatibility group   _
Plasmid size   4040 bp Coordinate of oriT [Strand]   2547..2587 [+]
Host baterium   Staphylococcus saprophyticus

Cargo genes

Drug resistance gene   erm(C)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -