Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100259
Name   oriT_pSHaeC in_silico
Organism   Staphylococcus haemolyticus JCSC1435
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_007171 (5700..5937 [+], 238 nt)
oriT length   238 nt
IRs (inverted repeats)      IR1: 52..59, 61..68  (TTGGGGAT..ATCCCCAA)
  IR2: 94..98, 104..108  (TGGCT..AGCCA)
Location of nic site      115..116
Conserved sequence flanking the
  nic site    		  TGCTTG|CCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 238 nt

>oriT_pSHaeC
AGTGGCTAACAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATTATCCCCAACAAGCAGGCGTCGCTACCACGTGAGTGGCTAGCAAAGCCAATGCTTGCCAAACCACTTTATTACTTGATGAAATTTAGATTATCATATAATCTAAATTTATATTAAGTAATATCTTTCGAAGAAAGCGTGGTGGGATTTGATGAGCGAACAAAATAAATTTGTGGCTAGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   330 GenBank   WP_011276930
Name   Rlx_pSHaeC insolico UniProt ID   Q4L2X5
Length   335 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 335 a.a.        Molecular weight: 38497.38 Da        Isoelectric Point: 6.8321

>WP_011276930.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus haemolyticus]
MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLALAEKFATNHQVAVYTHCDTDHIHNHIVINAVNLETGKKFNNNKQALRDLRDFNDNVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSKATNMDEFKEHLSQYGIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQEREYDKDIQPKRPTSNRDEPAQRDTGVTQSDW
DKFAQDTNELERRRQAAESARLVDEKARRDREERERAEQASRTIIDNDRDHGLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-242)


  Protein structure


Source ID Structure
AlphaFold DB Q4L2X5


Host bacterium

ID   721 GenBank   NC_007171
Plasmid name   pSHaeC Incompatibility group   _
Plasmid size   8180 bp Coordinate of oriT [Strand]   5700..5937 [+]
Host baterium   Staphylococcus haemolyticus JCSC1435

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -