Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100257
Name   oriT_pMG1 in_silico
Organism   Bifidobacterium longum
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_006997 (3539..3570 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      1..8, 12..19  (ATGCAACC..GGTTGCAT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 32 nt

>oriT_pMG1
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   328 GenBank   YP_232882
Name   Mob_pMG1 insolico UniProt ID   Q53EJ2
Length   646 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 646 a.a.        Molecular weight: 71649.92 Da        Isoelectric Point: 11.8573

>YP_232882.1 putative mobilization protein (plasmid) [Bifidobacterium longum]
MAIYHLSVSNVSRASGSKATATLSYISGRRVHDERRGAYDYGRKERDVLRVGTLLPEGAPAEYADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHDDGRGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWANTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAE
LGRIFDRLGELFAAKIGRLRRRQARPEPAEPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNRE
KWWRSHGHRGARGRQADHRRGAGGLARGQGREHLQARQAAAERRAGGRRAVREAARGGAVARRRRHPGRL
GPGQQVPHEDHQGHLRPRHAAEDQASWPNWRGGSNRPNGRERTAKPRTGEGPRTAYGRTTRAGGEPDAGH
ETARTVRRRAAGPQRARGLGRGQPVRITPGPQDQGRPAQRDQTAHGQAHRPAGGANSGRSTHGARNRPKA
RTRPLEQLSGVLRMMFAVASVKRAETAFPGLHGAVEVVTRGRHVEQLSGREHLAVPGDASSNGPHPPPSS
PPRAWRRSPEGSRGRT

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(19-253)


  Protein structure


Source ID Structure
AlphaFold DB Q53EJ2


Host bacterium

ID   719 GenBank   NC_006997
Plasmid name   pMG1 Incompatibility group   _
Plasmid size   3682 bp Coordinate of oriT [Strand]   3539..3570 [+]
Host baterium   Bifidobacterium longum

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -