Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100254
Name   oriT_pTB6 in_silico
Organism   Bifidobacterium longum
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_006843 (3476..3507 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      1..8, 12..19  (ATGCAACC..GGTTGCAT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 32 nt

>oriT_pTB6
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   325 GenBank   YP_209204
Name   Mob_pTB6 insolico UniProt ID   Q5FBB0
Length   362 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 362 a.a.        Molecular weight: 40521.51 Da        Isoelectric Point: 10.5320

>YP_209204.1 mobilization protein A (plasmid) [Bifidobacterium longum]
MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAPAEFADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHEDREGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWAKTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCEANREIRRSNGLLTSIRTE
LGRIFDRLGELFAAKIRAAAPTPGEAGTGQGAELALLRGRRAPPARSRQGRPHGSDPWKTHGSQGRREEP
RGVVEEPRHRGV

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(19-253)


  Protein structure


Source ID Structure
AlphaFold DB Q5FBB0


Host bacterium

ID   716 GenBank   NC_006843
Plasmid name   pTB6 Incompatibility group   _
Plasmid size   3624 bp Coordinate of oriT [Strand]   3476..3507 [+]
Host baterium   Bifidobacterium longum

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -