Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100248
Name   oriT_pS194 in_silico
Organism   Staphylococcus aureus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_005564 (902..954 [+], 53 nt)
oriT length   53 nt
IRs (inverted repeats)      12..19, 35..42  (GTATATTC..GAATATAC)
Location of nic site      50..51
Conserved sequence flanking the
  nic site    		  CGCTTG|CCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 53 nt

>oriT_pS194
CCAGCAAGCCGGTATATTCAGAACGAAGTGGCTAGAATATACGACGCTTGCCA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   319 GenBank   NP_976272
Name   ORF(rlx)_pS194 insolico UniProt ID   P12054
Length   320 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 320 a.a.        Molecular weight: 36996.97 Da        Isoelectric Point: 5.6018

>NP_976272.1 ORF (rlx) (plasmid) [Staphylococcus aureus]
MATTKLGNTKSASRAINYAEERAEEKSGLNCDVDYAKSYFKQTRALYGKENGVQAHTVIQSFKPGEVTAK
ECNEIGLELAKKIAPDYQVAVYTHTDKDHYHNHIIINSVNLETGNKYQSNKEQRDFIKKANDQLCEERGL
SVPEKSSEIRYTLAEQNMIDKDKRSWKNDIRMAVEETKDNAVAFEEFNTLLKEKGVEITRVTKNNVTYRH
IEEDKKVRGNKLGDSYDKGVIENGFAIEKFRREREEEREYDEYADTFEVDWDAFAENSEDLRKRRIARTE
ETKQASNKIYIRDERTTGLERKGIAGNQVEFEKDDGGLSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(8-235)


  Protein structure


Source ID Structure
AlphaFold DB P12054


Host bacterium

ID   710 GenBank   NC_005564
Plasmid name   pS194 Incompatibility group   _
Plasmid size   4397 bp Coordinate of oriT [Strand]   902..954 [+]
Host baterium   Staphylococcus aureus

Cargo genes

Drug resistance gene   str
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -