Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100241
Name   oriT_pAMalpha1 in_silico
Organism   Enterococcus faecalis
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_005013 (3553..3813 [+], 261 nt)
oriT length   261 nt
IRs (inverted repeats)      IR1: 178..185, 187..194  (GGGGCAC.GTGCCCC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 261 nt

>oriT_pAMalpha1
CTGCTAGCCGGTGCTAGTAATGTGCTAATTTGGTGCTAAAAACCTGCTAGTCACTGCTAGGAATCTGCTAGTTTGGGTGCTAGAAACCTGCTATTGAGTGCTAAAAATGTGCTAGTTTACCTGAAAGTACCTGCTAGTAAAGTGCTAGCGAAGAACGAAAGTGTACCCCACGGGAAAGCCTTGCACTGCAAGGCGGGGCACCTTGTGTGCCCCCCAGTTCCCCTTATGCTCTTCCGAAACACAGGAAGAAATTAAGCGAAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   312 GenBank   NP_863352
Name   MobB_pAMalpha1 insolico UniProt ID   Q7B6N6
Length   420 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 420 a.a.        Molecular weight: 49660.33 Da        Isoelectric Point: 9.9693

>NP_863352.1 MobB mobilization protein (plasmid) [Enterococcus faecalis]
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTR
KTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure


Source ID Structure
AlphaFold DB Q7B6N6


Host bacterium

ID   703 GenBank   NC_005013
Plasmid name   pAMalpha1 Incompatibility group   _
Plasmid size   9759 bp Coordinate of oriT [Strand]   3553..3813 [+]
Host baterium   Enterococcus faecalis

Cargo genes

Drug resistance gene   tetracycline resistance
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -