Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100232
Name   oriT_pDOJH10L in_silico
Organism   Bifidobacterium longum DJO10A
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_004252 (7357..7388 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      1..8, 12..19  (ATGCAACC..GGTTGCAT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 32 nt

>oriT_pDOJH10L
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   303 GenBank   WP_011067895
Name   PutativerelaxaseofpDOJH10L insolico UniProt ID   Q8GN74
Length   370 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 370 a.a.        Molecular weight: 41979.32 Da        Isoelectric Point: 10.0187

>WP_011067895.1 MobA/MobL family protein [Bifidobacterium longum]
MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVEMAEKRSDARPAKKIMVALPREFDAR
ERFRALEDFISWNITANGYACTYAIHTDKDGRNPHAHILVANRRIDPKTGRWAAKEPQASSRDANGRRIP
VIDPDTGRQKIGARNRKVWKRVNVSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIP
TIHEGYASREMEKRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSS
PEPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEPDMEETWDLSD
PADPLNIGMGWGTGGHGLGL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(1-224)


  Protein structure


Source ID Structure
AlphaFold DB Q8GN74


Host bacterium

ID   694 GenBank   NC_004252
Plasmid name   pDOJH10L Incompatibility group   _
Plasmid size   10073 bp Coordinate of oriT [Strand]   7357..7388 [+]
Host baterium   Bifidobacterium longum DJO10A

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -