Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100226
Name   oriT_pER13 in_silico
Organism   Streptococcus thermophilus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_002776 (1836..1877 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      3..10, 14..20  (ACATTTAC..GTAAAGT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  GCG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 42 nt

>oriT_pER13
GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   297 GenBank   NP_115336
Name   Mob_pER13 insolico UniProt ID   Q93SL7
Length   499 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 499 a.a.        Molecular weight: 58289.87 Da        Isoelectric Point: 5.7338

>NP_115336.1 Mob (plasmid) [Streptococcus thermophilus]
MSYMVARMQKMKAGNLGGAYKHNERVFETHSNKDIDPSRSPLNYELTDRDHSVSYEKQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKSFFEKLSEGETREFFETAKNYFAENYGEDNIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELERGELNSEAKHKTVAEFKQEMAGKEIEKQLVLEYG
APEYVNHQEEFVTKEEYQEAYEVFQNELGAWVDKSDFSWRETTFQEKIDWVKNHQQEELQQLVSSRKPLE
DEIRTLNEVLKEKYEELDKIELRASESLSELSGVEGYINNLEKHSNALESKIGGLENEYLRLAKQNARLS
DLKIMSEKELAEIQPKKGMFGKEHVELTKEQFEKFKGLIYRSKNLVHEKVLENDQLRRRMPLRSSKNGFE
ASLQWVKDKTKGESIDRLKSEIRALKNENSVLRQQNDKMLGKLREFMPDKALNTFISELKAIQPIVKIVK
RVIEKGLGL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB Q93SL7


Host bacterium

ID   688 GenBank   NC_002776
Plasmid name   pER13 Incompatibility group   _
Plasmid size   4139 bp Coordinate of oriT [Strand]   1836..1877 [+]
Host baterium   Streptococcus thermophilus

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -