Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 100222
• Name: oriT_pUCD5000
• Organism: Tatumella morbirosei
• Sequence Completeness: intact
• NCBI accession of oriT (coordinates [strand]): NC_001898 (1385..1562 [-], 178 nt)
• oriT length: 178 nt
• IRs (inverted repeats): 9..16, 20..27 (TTTCGGGC..GCCCTGAA)
• Location of nic site: 60..61
• Conserved sequence flanking the nic site: CTGG|CTTC
• Note: predicted by the oriTfinder

oriT sequence

• Length: 178 nt

>oriT_pUCD5000
TTAGCCGGTTTCGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTCTATGTTAGTTCGAAGTGGTGATTCAGGAAAGTGCTTCATGTGACAGGGGGAAATGCAGCAAAAGTGCGTAGGGAGAAAATACAAGAACGGATGAAATGACGCCTCCTCGCTCAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_pUCD5000

• ID: 293
• GenBank: NP_046807
• Name: MobA_pUCD5000
• UniProt ID: _
• Length: 421 a.a.
• Note: putative relaxase

Relaxase protein sequence

• Length: 421 a.a.
• Molecular weight: 46978.96 Da
• Isoelectric Point: 6.4041

>NP_046807.1 MobA (plasmid) [Tatumella morbirosei]
MASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRL
GLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLSLASSGELKTRQDVTEALESAGFEVVRTTKSSIS
IADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQNGTERKREENQRRHPR
PRPEAVLSHESAYERDAAHGQPNVADHRPSIRAADSLERGHSVVAESADTRQLHDHPGAEEHGGHTLREE
QRPATLDLWRAETPLREGEPGSGTVRRGFELDDTGGEIAHDRAGKTVAERIRAATAGLLEKAGRVGERLR
GMADDVWSYAKGERGAERARHGLEQAGAEFERARTPVVVKLNSIEALREQHEKELELERSQRQQTYDGPS
L

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (2-165)

Protein structure

No available structure.

Host bacterium

• ID: 684
• GenBank: NC_001898
• Plasmid name: pUCD5000
• Incompatibility group: Col440I
• Plasmid size: 5229 bp
• Coordinate of oriT [Strand]: 1385..1562 [-]
• Host baterium: Tatumella morbirosei

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -