Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100153 |
| Name | oriT_pGL2  |
| Organism | Lactococcus garvieae |
| Sequence Completeness | incomplete |
| NCBI accession of oriT (coordinates [strand]) | NC_016981 (2897..2905 [+], 9 nt) |
| oriT length | 9 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | 6..7 |
| Conserved sequence flanking the nic site |
AGTAAG|TTA |
| Note | _ |
oriT sequence
Download Length: 9 nt
>oriT_pGL2
AGTAAGTTA
AGTAAGTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Aguado-Urda M et al. (2012) Characterization of plasmids in a human clinical strain of Lactococcus garvieae. PLoS One. 7(6):e40119. [PMID:22768237]
Host bacterium
| ID | 147 | GenBank | NC_016981 |
| Plasmid name | pGL2 | Incompatibility group | - |
| Plasmid size | 4572 bp | Coordinate of oriT [Strand] | 2897..2905 [+] |
| Host baterium | Lactococcus garvieae |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |