Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100135 |
| Name | oriT_pPAGA3  |
| Organism | Pantoea agglomerans |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NC_014227 (125..370 [-], 246 nt) |
| oriT length | 246 nt |
| IRs (inverted repeats) | IR1: 151..155, 157..161 (CTGTA..TACAG) IR2: 204..208, 219..223 (GCTTT..AAAGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | _ |
oriT sequence
Download Length: 246 nt
>oriT_pPAGA3
GATGCTCGGTGACCTGTCGGGTAACTCTGACATGGCCATCAGTGACCCGCTGTCTGGAAATCTCAATGACTTCTTCCGCCAGTCTTATTACCTGGTCGTTACCCTCTGACCCTGGTTCTTCAGGAGGTTGATTGTTCATGGTTAACCTGCCTGTAATACAGAGCGATCATTTGTACTTTTCCTGACCTTGAGCATAAGTGACTGCTTTCCGGCTGATTAAAGCCTGGCACAAAGAACTACAAAAGA
GATGCTCGGTGACCTGTCGGGTAACTCTGACATGGCCATCAGTGACCCGCTGTCTGGAAATCTCAATGACTTCTTCCGCCAGTCTTATTACCTGGTCGTTACCCTCTGACCCTGGTTCTTCAGGAGGTTGATTGTTCATGGTTAACCTGCCTGTAATACAGAGCGATCATTTGTACTTTTCCTGACCTTGAGCATAAGTGACTGCTTTCCGGCTGATTAAAGCCTGGCACAAAGAACTACAAAAGA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 130 | GenBank | NC_014227 |
| Plasmid name | pPAGA3 | Incompatibility group | - |
| Plasmid size | 2734 bp | Coordinate of oriT [Strand] | 125..370 [-] |
| Host baterium | Pantoea agglomerans |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |