Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100070 |
| Name | oriT_pIL1  |
| Organism | Lactococcus lactis subsp. lactis |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NC_015860 (_) |
| oriT length | 277 nt |
| IRs (inverted repeats) | IR1: 91..100, 105..114 (CCCATTTTAT..ATAAAATGGG) IR2: 160..172, 176..188 (AAAAGGGGAAAGT..ACTTCCCCCTTTT) IR3: 195..208, 221..234 (ACATTGTAATACAA..TTGTATTACAATGT) |
| Location of nic site | 243..244 |
| Conserved sequence flanking the nic site |
CTTG|CA |
| Note | similar to pCD4 plasmid oriT; Lactococcus lactis oriT |
oriT sequence
Download Length: 277 nt
>oriT_pIL1
ATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGTAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTG
ATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGTAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Górecki RK et al. (2011) Adaptative potential of the Lactococcus lactis IL594 strain encoded in its 7 plasmids. PLoS One. 6(7):e22238. [PMID:21789242]
Host bacterium
| ID | 66 | GenBank | NC_015860 |
| Plasmid name | pIL1 | Incompatibility group | _ |
| Plasmid size | 6382 bp | Coordinate of oriT [Strand] | |
| Host baterium | Lactococcus lactis subsp. lactis |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |