Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   100059
Name   oriT1_pSe-Kan in_silico
Organism   Salmonella enterica subsp. enterica serovar Typhimurium
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_015570 (936..993 [-], 58 nt)
oriT length   58 nt
IRs (inverted repeats)      1..10, 14..23  (GTGTCGGGGC..GCCATGACCC)
Location of nic site      54..55
Conserved sequence flanking the
  nic site  
 
 CTGG|CTTA
Note   _

  oriT sequence  


Download         Length: 58 nt

>oriT1_pSe-Kan
GTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file

  Reference


[1] Chen CY et al. (2011) Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars. Plasmid. 65(3):246-52. [PMID:21324339]


Host bacterium


ID   56 GenBank   NC_015570
Plasmid name   pSe-Kan Incompatibility group   ColRNAI
Plasmid size   7132 bp Coordinate of oriT [Strand]   936..993 [-]; 1522..1790 [-]
Host baterium   Salmonella enterica subsp. enterica serovar Typhimurium

Cargo genes


Drug resistance gene   aph(3')-Ia
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -