Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100012 |
| Name | oriT_pTSA  |
| Organism | Comamonas testosteroni |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | AF305549 ( , 300 nt) |
| oriT length | 300 nt |
| IRs (inverted repeats) | 55..72, 75..92 (TGAAGATAGATAACCGGC..GCCGGTTAGCTAACTTCA) |
| Location of nic site | 101..102 |
| Conserved sequence flanking the nic site |
CATCCTG|C |
| Note | IncP1 oriT |
oriT sequence
Download Length: 300 nt
>oriT_pTSA
TGCCTCGCAGAGCAGGATGACCCGTTGAGCGCCCCCGGCGCGAATAAGGGACAGTGAAGATAGATAACCGGCTCGCCGGTTAGCTAACTTCACACATCCTGCCCGCCTTACGGCGTTAATAACACCAAGGAAAGTCTACACCAGCCATTACGATTTATCCGCAACTATCGCGCTATCAGGCCGCAAAAGCAGCAACGGATATAGCGAAACCCGCCACAATGGCCCATAATGCCGCTATCGAAGCGTGCCAATGCACGCCGATAGCGGACTTTTTGCGTTTCCGTAGCGCCGCTTAGTAGC
TGCCTCGCAGAGCAGGATGACCCGTTGAGCGCCCCCGGCGCGAATAAGGGACAGTGAAGATAGATAACCGGCTCGCCGGTTAGCTAACTTCACACATCCTGCCCGCCTTACGGCGTTAATAACACCAAGGAAAGTCTACACCAGCCATTACGATTTATCCGCAACTATCGCGCTATCAGGCCGCAAAAGCAGCAACGGATATAGCGAAACCCGCCACAATGGCCCATAATGCCGCTATCGAAGCGTGCCAATGCACGCCGATAGCGGACTTTTTGCGTTTCCGTAGCGCCGCTTAGTAGC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Tralau T et al. (2001) Map of the IncP1beta plasmid pTSA encoding the widespread genes (tsa) for p-toluenesulfonate degradation in Comamonas testosteroni T-2. Appl Environ Microbiol. 67(4):1508-16. [PMID:11282598]
Host bacterium
| ID | 11 | GenBank | AF305549 |
| Plasmid name | pTSA | Incompatibility group | IncP1 |
| Plasmid size | 300 bp | Coordinate of oriT [Strand] | _ |
| Host baterium | Comamonas testosteroni |
Cargo genes
| Drug resistance gene | _ |
| Virulence gene | _ |
| Metal resistance gene | mercury resistance |
| Degradation gene | degradation of p-toluenesulfonate |
| Symbiosis gene | - |
| Anti-CRISPR | - |