oriTDB
I. Information of Relaxase
ID 46
Name TraA_pTi-SAKURA insolico
GenBank accession number NP_053349
Family MOBQ
Length 1194 aa
UniProt ID Q9R6F0
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 3.40E-76, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 3.20E-55, Aligned region: 381..570
AAA_19 [PF13245.5], Evalue: 2.30E-12, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 4.10E-05, Aligned region: 656..737
Note Dtr system oriT relaxase; Provisional
Protein sequence [Download] MAIAHFSASIVSRGDGRSAVLSAAYRHCAKMDYEREARTIDYTRKVGLLHEEFLLPDHAP
KWVRMLIADRSVAGASEAFWNRVEAFEKRIDAQLAKDLTVALPLELTAEQNIALVRDFVE
KHILSRGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGAKKVAVIGEDGEPLRTKAGKIV
YELWAGGTDDFNAFRYAWFERMNHHLALNGINLRVDGRSYEKQGIDLVPTIHLGVGAKAI
ERKAEGEGRKAELERLELNEERREENARRIRENPKLVLDLITREKSVFDERDVAKILHRY
IDDAGMFRNMMARIMQSGQVLRLERERISLATGKREPSKFTTHELIRLEATMARSAMWLD
RRSSHGVGKVLLDATFARHDRLSQEQRTALAHIAGANRIAAVVGRAGAGKTTMMKAARET
WEAAGYRVVGAALAGKAAEGLEKEAGIIARTLSSWELRWQQERDRLDDRTVMVLDEAGMV
SSRQMAMLVQAATEAGAKLVLVGDPDQLQPIEAGAAFRAITDRIGYAELGTIYRQREAWM
RRASVDLAHRQVGSALAAYDRANLIHSHWSKDEAIASLIEDWNRDYDPARSSLILAHRRL
DVRALNELARERLVGRGFVGEGFAFRTEEGERRFDAGDRIVFLKNEGSLGVKNGMLAKVV
EAAPGRFVAEIGEGEDGRQVTVDQHLYANVDHGYATTIHKSQGATVDDVRVLASGTMDRH
LTYVALTRHRDAARLYVGMNEFTNRGGVLVDHGEAPYENKPENHDSYFVTLETGEGKQNT
IWGVDLRRAMAEAAPQIGDRIGLDHKGSEMVRLPDGKKVKRHTWKVVDIRELALSRMTER
MSRDAAKETTLDYENASFYRAALRFADTHGLRVMNVARTMMRDRLDWTVRQKQRLARLGS
RLLAIGGKLGLVSSTHQQQSLSSNMKEVRPMVAGITIHPKSLDQAVEDKLAADPGLKKQW
EEVSSRFHLIYAQPEAAFRAVDVDAALKDPATAKSTLAKIANEPESFGALKGKTGLFASR
VEKEDRDIAHVNAPALSRDLERYLQMRTNAMQRLEAEERAIRHRVSIDIPALSPSARTVL
ERVRDAIDRNDLPAALGYAVSDKEAKLEIDGFNKAVSERFGERSLLTNAAREPSGRLFEQ
LAKGLQPQEKEHLAEAWPVMRTAQQLAAHERTAATLKQVEDLRLSQRQTPVIKQ
Reference
[1] Suzuki K et al (2000) Complete nucleotide sequence of a plant tumor-inducing Ti plasmid. Gene. 242(1-2):331-6. [PMID:10721727]

II. Auxiliary DNA-binding protein(s) of the relaxosome
# ID Name GenBank Length Note
1 76 TraC_pTi-SAKURA insolico NP_053348 98 aa conjugal transfer protein TraC; Provisional
2 77 TraD_pTi-SAKURA insolico NP_053347 71 aa conjugal transfer protein TraD; Provisional

Microbial Bioinformatics Group in MML, SJTU