oriTDB
I. Information of Relaxase
ID 220
Name YdcR (NicK)_ICEBs1 insolico
GenBank accession number CAB12294
Family MOBT
Length 352 aa
UniProt ID P96635
PDB ID _
Pfam Rep_trans [PF02486.18], Evalue: 1.60E-66, Aligned region: 126..327
Note The ICEBs1 ydcR (nicK) gene product is homologous to the pT181 family of plasmid DNA relaxases.
Protein sequence [Download] MDELKQPPHANRGVVIVKEKNEAVESPLVSMVDYIRVSFKTHDVDRIIEEVLHLSKDFMT
EKQSGFYGYVGTYELDYIKVFYSAPDDNRGVLIEMSGQGCRQFESFLECRKKTWYDFFQD
CMQQGGSFTRFDLAIDDKKTYFSIPELLKKAQKGECISRFRKSDFNGSFDLSDGITGGTT
IYFGSKKSEAYLCFYEKNYEQAEKYNIPLEELGDWNRYELRLKNERAQVAIDALLKTKDL
TLIAMQIINNYVRFVDADENITREHWKTSLFWSDFIGDVGRLPLYVKPQKDFYQKSRNWL
RNSCAPTMKMVLEADEHLGKTDLSDMIAEAELADKHKKMLDVYMADVADMVV
Reference
[1] Lee CA et al (2012) The Bacillus subtilis conjugative transposon ICEBs1 mobilizes plasmids lacking dedicated mobilization functions. J Bacteriol. 194(12):3165-72. [PMID:22505685]
[2] Lee CA et al (2007) Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis. J Bacteriol. 189(20):7254-61. [PMID:17693500]
[3] Lee CA et al (2010) Autonomous plasmid-like replication of a conjugative transposon. Mol Microbiol. 75(2):268-79. [PMID:19943900]

II. Auxiliary DNA-binding protein(s) of the relaxosome
# ID Name GenBank Length Note
1 308 _ insolico

Microbial Bioinformatics Group in MML, SJTU