oriTDB
I. Information of Relaxase
ID 157
Name RepB/MobA_pRAS3.2 insolico
GenBank accession number NP_387464
Family MOBP
Length 833 aa
UniProt ID Q939A9
PDB ID _
Pfam RepB_primase [PF16793.4], Evalue: 1.40E-70, Aligned region: 491..750
Relaxase [PF03432.13], Evalue: 6.00E-30, Aligned region: 6..217
Note relaxase
Protein sequence [Download] MIALSQEAVRSKDTINHYVLSWREGEQPSPEQVEEAVSIFMDELGWKDHQAIYGLHSDTD
NIHLHIVINRVHPETLKIVEKNRGFDIELAHKAIARIEHAQGWQREQNGRYQVLENGELG
RAPYDPEKPRQPDQKKRDMENRTGEKSAHRIAIEDGAAIIKQAQTWEQLHRELAAKGMRY
EKTGSGATVFVGDVGVKASDVDRNASLAKMQKRLGEYQPAPQRQQVAPREPEPIKPDVPG
WKDYITGRKAHYAEKNADKLAQDKRQEQERKQLAEQQKARRDELMRGNWKGKGEVLNAMR
SVIAAEQAAEKAALKEKHQKEREQHRQRFRPYPDLEQWQRMQKSPELAEQWRHRASEPQR
IEGDRSEPPTPRDIRAYQPEIVGQQVHYSRKEEAGRGGGVSFVDKGKSIDIHDWRNRDST
LAALQLSAQKWGSFTVMGNDEYKAMCGKLAAEHGFKITNPELQESIQQERQRIQQERVQA
MKSEQLKQFERYAEAVGAERYRVTSIKMREDGSKQTFILDKKDGITRGFTPQEIEQRTPE
MQRLQRRGENLYYTPLSDKKHHILIDDMNREKLERLIRDGYQPAAVLESSPGNYQAIITV
PKLGTAHDKDVGNRLSDALNREYGDPKLSGAIHPHRAPGYENRKPKHQREDGSYPEVRLL
KAERRECIKALALSSQIDAEYQRQAALKAQQPERSKAKPALELAAASGSAIDAYQRHYRD
VLKRQRGGEVDLSRLDSMIAVRMRVTGHDQAAIEGAIRQCAPATRQKDEGRDWNDYAQRT
ARYAYSAAGDRQAAELGKYRQQWEKLEGREPVRQQEQAKAQKIERDNSPGMSL
Reference
[1] L'Abée-Lund TM et al (2002) A global non-conjugative Tet C plasmid, pRAS3, from Aeromonas salmonicida. Plasmid. 47(3):172-81. [PMID:12151232]
[2] Loftie-Eaton W et al (2009) Comparative biology of two natural variants of the IncQ-2 family plasmids, pRAS3.1 and pRAS3.2. J Bacteriol. 191(20):6436-46. [PMID:19684126]

II. Auxiliary DNA-binding protein(s) of the relaxosome
# ID Name GenBank Length Note
1 227 MobC_pRAS3.2 insolico NP_387458 118 aa _

Microbial Bioinformatics Group in MML, SJTU