oriTDB
The information of the oriT region
oriTDB accession number 100987
Name oriT_pN3-7A-1  insolico
Sequence Completeness intact
oriT length 106 nt
oriT sequence CAGCCTCGCAGAGCAGGATTTCCGTTGAGCACCGCCAGGTGCGAATAAGGGCAAGTGAAG AAGGACAACCCGCTTGCGGGTGGGCCTACTTCACACATCCTGCCCG
IR (inverted repeat)[55-73] [76-94] nt  (GTGAAGAAGGACAACCCGC..GCGGGTGGGCCTACTTCAC)
Location of nic site [102-103] nt
Conserved sequence flanking the
  nic site 		CATCCTG|C
Note predicted by the oriTfinder
L:55-73;R:76-94;D:102-103
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1057
Name TrbI_pN3-7A-1 insolico
GenBank accession number WP_089031315
Family MOBP
Length 598 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.30E-53, Aligned region: 12..252
Note putative relaxase
Protein sequence [Download] MIAKHIAMRSLGKSDFAGLVSYVTDAQSKDHRLGQVQITNCDAVSVQDAITEILATQHSN
TRAKGDKTYHLIVSFRAGEQPSADTLRAIEERICAGLGYGEHQRVSAVHNDTDNLHIHIA
INKIHPARHTMHEPYYPHLALADLCTALEREYGLEPDNHQSHQRGAASRAADMERHAGVD
SLVGWIKRECLEEIKAAQSWAELHQVMRDNSLEMTPRGNGLVIRADDGTMVKPSTVAREL
SKPALERRLGAFEAPPEWVERKQAKREYQKKPVRSRADTTELYARYKDEQKNLTVARAEA
LAAAKRRKDRAVAHAKQKAVTKRAAIKLAGGGKVSKKLLYSQTSATLRAELDGIHKAYAR
EREWLFDGHQRRQWVDWLKHEATQGNSEALAALRAREAAQGLKGNTLAAQGEAKPGHAPV
IDNITKKGTIIYRAGQSAVRDDGDRLQVSTGADRAGVLEALRLAAERYGDRITVNGTTEF
KAQAIRAAVDGRLTITFADSALEKRRQALLQDNFSATRKPGVPGVGKAPPPAARAGRLRS
LAQAEALQIEGAAAAVTPQRPAVALTPASSELARRKAKLQAELSAKKERTNQRKGRGR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1445
Plasmid name pN3-7A-1
GenBank accession number NZ_CP022308.1
Genome size 427202 bp
Coordinate of oriT  [Strand] 41083..41188 [-]
Drug resistance _
Heavy-metal resistance insolico copper resistance
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Alcanivorax sp. N3-7A [2014542]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU