oriTDB
The information of the oriT region
oriTDB accession number 100986
Name oriT_pAMT3  insolico
Sequence Completeness intact
oriT length 238 nt
oriT sequence AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATCCTAAGGGGCTTGGGGATA TTCCCCAACAAGCAGGCGTCGCTACCACGTGAGTGGCTAGCAAAGCCAGTGCTTGCCAAA CCACTTAACGACTTGATTAATTTTGCTTTACCCTGTAAAGTAAAATTATATTAAGGAGTT ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAACACATTTGTGGCTAGC
IR (inverted repeat)IR1: [52-58] [62-68] nt  (TTGGGGA..TCCCCAA)
IR2: [94-98] [104-108] nt  (TGGCT..AGCCA)
Location of nic site [115-116] nt
Conserved sequence flanking the
  nic site 		TGCTTG|CCA
Note predicted by the oriTfinder
L:52-58;R:62-68;L:94-98;R:104-108;D:115-116
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1056
Name Rlx_pAMT3 insolico
GenBank accession number WP_088922916
Family MOBP
Length 336 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.80E-83, Aligned region: 8..242
Note putative relaxase
Protein sequence [Download] MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQ
SFQPGEVTPEQCNQLGLALAEKLTPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNN
KQALRNVRNFNDEVCMEHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI
DQSQATNMDEFKDHLNQHGIELERVTPKSITYRHLAEDKKVRGRKLGEDYNKGGIEDGFE
RQIQRRKQQERDSDTEFQPKRPTSNRDEATERDTGVTQSDWDQFAQDTNELERSRQAAES
ARLAHEKARRDREERERAKQASRTIINDHRDHGLEL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1444
Plasmid name pAMT3
GenBank accession number NZ_CP022251.1
Genome size 7554 bp
Coordinate of oriT  [Strand] 2551..2788 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus epidermidis ATCC 12228 [1282]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU