oriTDB

The information of the oriT region

oriTDB accession number	100980
Name	oriT_p1315K-1
Sequence Completeness	intact
oriT length	89 nt
oriT sequence	GCTCCTTACCGGGGTGTCGGGGCGAAGCCCTGACCAGGTGGTAAATGTATGGCCGCGCGT GCGCGGTTATACATTTACACATCCTGTCC
IR (inverted repeat)	IR1: [16-23] [27-34] nt (GTCGGGGC..GCCCTGAC) IR2: [41-58] [61-78] nt (GTAAATGTATGGCCGCGC..GCGCGGTTATACATTTAC)
Location of nic site	[86-87] nt
Conserved sequence flanking the nic site	CATCCTG\|T
Note	predicted by the oriTfinder
	L:16-23;R:27-34;L:41-58;R:61-78;D:86-87

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GCTCCTTACCGGGGTGTCGGGGCGAAGCCCTGACCAGGTGGTAAATGTATGGCCGCGCGT

61

GCGCGGTTATACATTTACACATCCTGTCC

Reference
N/A

I. Information of Relaxase

ID	1050
Name	NikB_p1315K-1
GenBank accession number	WP_080227073
Family	MOB_P
Length	899 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 2.80E-54, Aligned region: 61..315
Note	putative relaxase
Protein sequence [Download]	MNGIIPKKRRDGKSSFEDLVSYVSVRDDLEDEELQALSSVQSLLSHRSRFSRLVDHATRL RDESFVSLVDVMKDGCEWVNFYGVTCFHNCTSLETAAEEMEYTARQARYAKDDTDPVFHY ILSWQSHESPRPEQIYDSVRHTLKALGLSSHQYVSAVHTDTDNLHVHVAVNRVHPDTGYL NCLSWSQEKLSRACRELELKHGFAPDNGCWIHAPGCRIVRKTAAERDRQNAWTRGKKQTF REYVSQTAVAGLRSEPVHDWLSLHRRLAEDGLYLTLQNGSFMVMDGWDRSREGVQLDSFG PSWNGDKLRKKMGEYTPVPKDIFSQVGAPGRYKPEVIAADTRPEKMAETVNLMQYACRHL GDRLPEMAREGKLESCLDIHRTLAEAGLWMRIQHGHLVICDGSDHNQTPVRADSVWPLLT PENVNQLDGGWQPVPDDIFRQVTPAERFSGRRLESCPASDREWHRMRTGPGPQGAIRREL FSDKESLWGYSISHCSPQIEEMITRGEFTWHHCHELFARQGLMLQRQHHGLVVVDAFNHE QTPVKASSIHPDLTLERAEPQAGPFVSAPADLFDRVKPESRYNPELAVSDQSPEDCRRDP VLRRQRREARAEARAELRARYLAWREHWRKPELRYGERSREIHQACRLRKSHIRVQYDDP VLRKLHYHIAEVQRMQALIRLKEEVRDERQKLIAEGKWYPPSYRQWVKAQAVQGDRAAVS QLRGWDYRDRRKDKSRTTTADRCVILCEPGGTPVYENRGDLEARLQKNGSVRFRDRRTDQ FVCTDYGDRVVFHNHHDRNELADKLDLIAPVLFERDPRMGFEPEGNDRQFNQVFAEMVAW HNVTERTGHGDYTISRPDVDHHREGSERYYRSYINAHAGCDRAPRFQEDEKGWEPPTPV

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1438
Plasmid name	p1315K-1
GenBank accession number	NZ_CP022140.1
Incompatibility group	IncFIB(S)
Genome size	109681 bp
Coordinate of oriT [Strand]	62236..62324 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica subsp. enterica 1315K [1243602]

Reference
N/A