oriTDB
The information of the oriT region
oriTDB accession number 100967
Name oriT_unitig_1-pAR_0114  insolico
Sequence Completeness intact
oriT length 290 nt
oriT sequence CGCACCGCTAGCAGCGCCCCTAGCGGTATCCTATAAAAAAACACACCGCGCCGCTAGCAG CACCCCTAATATAAAATAATGTTTTTTATAAAAATAGTCAGTACCACCCCTACAAAGCGG TGTCGGCGCGTTGTTGTAGCCGCGCCGACACCGCTTTTTTAAATATCATAAAGAGAGTAA GAGAAACTAATTTTTCATAACTCTCTATTTATAAAGAAAAATCAGCAAAAACTTGTTTTT GCGTGGGGTGTGGTGCTTTTGGTGGTGAGAACCACCAACCTGTTGAGCCT
IR (inverted repeat)[225-232] [235-242] n  (GCAAAAAC..GTTTTTGC)
Location of nic site [251-252] nt
Conserved sequence flanking the
  nic site 		GTGGGGTGT|GG
Note predicted by the oriTfinder
L:225-232;R:235-242;D:251-252
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1037
Name Relaxase of unitig_1-pAR_0114 insolico
GenBank accession number WP_000130000
Family MOBC
Length 101 aa
UniProt ID _
PDB ID _
Pfam PadR [PF03551.13], Evalue: 4.70E-21, Aligned region: 15..85
HTH_34 [PF13601.5], Evalue: 2.60E-08, Aligned region: 27..94
Note putative relaxase
Protein sequence [Download] MTDKDLYGGLIRLHILHHAAEEPVFGLGIIEELRRHGYEMSAGTVYPMLHGLEKKGYLTS
RHERTGRRERRVYDITEQGRTALADAKTKVKELFGELVEGG
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1425
Plasmid name unitig_1-pAR_0114
GenBank accession number NZ_CP021733.1
Incompatibility group IncFIB(AP001918)
Genome size 114267 bp
Coordinate of oriT  [Strand] 12258..12547 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli AR_0114 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU