oriTDB
The information of the oriT region
oriTDB accession number 100957
Name oriT_pSmeRU11d  insolico
Sequence Completeness core
oriT length 35 nt
oriT sequence CCAAGGGCGCAATTATACGTCGCTGGCGCGACGTG
IR (inverted repeat)[16-23] [28-35] nt  (TACGTCGC..GCGACGTG)
Location of nic site [7-8] nt
Conserved sequence flanking the
  nic site 		AGGG|CGCA
Note predicted by the oriTfinder
L:16-23;R:28-35;D:7-8
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1027
Name TraA_pSmeRU11d insolico
GenBank accession number WP_017273093
Family MOBF
Length 1756 aa
UniProt ID _
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 1.30E-74, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 1.20E-56, Aligned region: 386..575
AAA_19 [PF13245.5], Evalue: 1.50E-11, Aligned region: 391..518
Viral_helicase1 [PF01443.17], Evalue: 1.80E-05, Aligned region: 673..742
UvrD_C_2 [PF13538.5], Evalue: 1.00E-06, Aligned region: 697..740
Note putative relaxase
Protein sequence [Download] MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMDFEREARTIDYTRKQGLLHEEFVIPEDAP
EWLRAMISDRSVSGASEAFWNSVEAFEKRSDAQLAKDVTIALPIELSAEQNIDLVQDFVA
RHITAQGMVADWVYHDAPGNPHIHMMTTLRPLTDDGFGSKKVAVLGPDGRPQRNDAGKIV
YELWADGADDFNAFRDGWFACQNRHLALAGLDIRVDGRSFEKQGIALEPTIHVGVGATAI
ERKADTAVETASAAAVKLERIELQEERREENARRIQRDPGLVLDLITREKSVFDERDIAR
VLHRYIDDPALFQDLMARVLQHPDALRLDSERISFSTGARSPAKYTTYDLIRIEAEMAQR
ALWLGRQHSYHVPTRVLGQVFKRHDRLADEQKSAIQHISRDVGIAAVVGRAGAGKTTMMK
AAREAWEAAGYRVVGAALAGKAAEGLEKEAGIASRTLSAWELRWDQDRDDLDDKTVMVLD
EAGMVSSRQMARFVEAATISGAKLVLVGDPDQLQPIEAGAAFRAISERIGYAGLETIYRQ
REQWMRDASLDLARGNVSAALAAYEQRDMVRTGWTRDDAITTLIADWDRDYDPAKSSLIL
AHRRRDVRMLNEMARDKLVERGLIEKGHAFKTEEGSRQFAVGDQIVFLKNEGSIGVKNGM
LARVVEAQPGRLVAEIGSGDDCRQVVVEQRFYANVDHGYATTVHKSQGATVDRVKVLASS
TLDRHLAYVAMTRHREAAELYVGLEEFAQRRGGVLIAHGEAPFEHKPGNRSSYYVTLGFA
NGQEHTLWGVDLARAMDVADARIGDRIGIEHAGSERVRLPDGTEANRNSWKVVPVEDLAM
ARMHERLSRDASKETTLDYQNASSYRAALRFADRRGLHLMSVGRTLLRDRLQWTIRQKEK
LTDLMSRLAAVGERLGLRPSVGGERQVRGASEIRNQTNSIIQEDRKPMVAGITTFAKSIE
KSVEDKVSADPALKSQWQEVSARFHLVYADPQAAFNAVNVDAMVGSSETAKATLATISRQ
PVTFGPLKGKTGLFAGKADSQARETALVNVPALARDLDEYLQKRAEAERRYEAEERAVRL
KVSIDIPALSGAAKQTLERVRDAIDRNDLPSGLEYALADKMVKAELEGFAKAVSERFGER
TFLPLAAKEADGKVFEKLSAGMAPAQKAELHSAWNTMRTVQRLSAHERTATALKQAETMR
QAKTTGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1415
Plasmid name pSmeRU11d
GenBank accession number NZ_CP021216.1
Genome size 166875 bp
Coordinate of oriT  [Strand] 45813..45847 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Sinorhizobium meliloti RU11/001 [1401243]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU