oriTDB
The information of the oriT region
oriTDB accession number 100953
Name oriT_pSCC4  insolico
Sequence Completeness intact
oriT length 103 nt
oriT sequence AGCCTCGCAGAGCAGGATTCCCGTTGAGCAGCCCAGCTGCGAATAAGGGAAGGTAAAGTT GGACCACCGTTTACGGTGGGCCTACTTTACATATCCTGCCCGG
IR (inverted repeat)[53-68] [75-90] nt  (GTAAAGTTGGACCACC..GGTGGGCCTACTT)
Location of nic site [98-99] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:53-68;R:75-90;D:98-99
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1023
Name TraI_pSCC4 insolico
GenBank accession number WP_050580356
Family MOBP
Length 869 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 7.80E-57, Aligned region: 5..245
Note putative relaxase
Protein sequence [Download] MKNIKKSSFSGLADYITNPQSKQERVGVIKATNCQSQDVQDAVTEVNITQRLNTRSESDK
TYHLVISFRPGEKPSEDVLNAIEESICQSLGFGDHQRLSAVHHDTDNLHIHVAINKINPD
TLTIHNPYNDYRVLAESCAYLEKKYGLEVDNHMPTRSASENRAKDMERHSGIQSLLSWVK
AECAEQLLNANSWQELHQAMRQNGLELRQKGNGFVIAGPDGLAVKASSVDRSLSRAALEK
KLGSFESSIPDTKPSRPSPEAIKQRFGSAANVKRPGDRPPPMRENRQVHLGDVPVMQINS
GKRYESKPLGSQGANTTELYGRYQSEQQRLTAARNEALRLAKVKRDRLIENAKRSGRLKR
ATIKLLKGPGVNKRYLYGLASKALGEELERANAIYKKDRQAAYDIHKRRTWADWLQFKAA
GGDDEALKTLRQRNAQQARKEANILHGDKVKKDGRIPGLKPDSVTKEGTIIYRVGESAIR
DGGKRLDVSRDAGDDGLHAALLMAKHRYGDKLTVNGSFEFKKRIVAVAAARELDVSFADP
ELEKLRQILTKKAAREREYIHIPFEKRGKARQAGAMWDTEKKSWFVGPYATRDRIENFIR
MNEEKDNEQRRQRYAGTERTDAGRERSGNGNATGANEPGVTGRSTSADAGNGYGTSSSRR
RTGTGDAVTTAGSQPGRSDDTRTGRSRAAEPNGERGHSKPNVARPGRQPPPTAKNRLRAM
SELGMVRIAGGSEVLLQGNVSDQLEHKTAERADQLRRDMAGAGGITTPAEVKKPLSSAEK
YINEREQKRLKGFDIPKHRGYNSTDKGLFEYAGQRKSGLETLALLKRDDEIVVMPVSDYT
ARRLSNLKVGESVTLTPSGSVRTTKGRSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1411
Plasmid name pSCC4
GenBank accession number NZ_CP021078.1
Genome size 44155 bp
Coordinate of oriT  [Strand] 3036..3138 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Citrobacter braakii SCC4 [57706]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU