oriTDB
The information of the oriT region
oriTDB accession number 100951
Name oriT_pXF-De_Donno  insolico
Sequence Completeness intact
oriT length 103 nt
oriT sequence AGCCTCGCAGAGCAGGATTCCCGTTGAGTGCCGAAGGTGCGAATAAGGGAAAGTGAAGAA GGAACACCGGATTTCCGGTGGGCCTACTTCACATATCCTGCCC
IR (inverted repeat)[53-70] [75-92] nt  (GTGAAGAAGGAACACCGG..CCGGTGGGCCTACTTCAC)
Location of nic site [100-101] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:53-70;R:75-92;D:100-101
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1021
Name TraI_pXF-De_Donno insolico
GenBank accession number WP_046417493
Family MOBP
Length 830 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 6.00E-54, Aligned region: 12..252
Note putative relaxase
Protein sequence [Download] MIAKHVPMRVVKKSDFRELVKYLSNQQGKQERVGCVTVTNCFQNNVMDAALEVQATQALN
TRSEADKTYHLLISFREGENPAPEILEVIESHVCAALGYADYQRVSVVHHDTDNLHIHVA
INKIHPKRYTIHTPYNDYKTLGEICKKLEREYGLEADNHTVRKTVGENRADDMERNAGVE
SLLGWIKRECTDQIKQAQSWSELHAVMQRNGLEIRERGNGLVITNGVGRSVKASSVARDF
SKEKLEARFGAFESFVKQAPSVSSVHARRIQAPLVEKVGRRPPPRSKGRTPSLSSVGVLH
VNSGIRYEQRPIYVKQASTAELYAMYKLEQQDLGAVRNVAIARARTNRDRKIEATKRLGR
IKRAAIKLMRGPGVNKKLLYALARKSLKEGVRKANTDYLKARDAAYATYHRRVWADWLQV
QATQGNAEALAALRAREMRQWWSCNIFGGLQVRRTGPVPGLKPDNITKAGTIIYRVGSTA
IRDDGDLLNVSHGAGDYGVEAALRMAMYRYGERITVKGSDEFKKRVVQIAAAARLNISFE
DEVLDKRRKQLVSDAAVIVKLTDAMLSDKTAQFTQAQASRVGAFQEDALSEYDAAISRSI
NLANQEQINEQQRTRAKHYFVQRWSDRGGPNSRRDGHATRIRSGGGGSGKHGASGATVIS
SAGGFNKPNVGGIGAKPPPASTHRLRNLHQLGVVQFSRGSEVLLPRHVSDCVGEQQTERN
HRVRRDVHTAGITSYELMAVDKYIAERELKRVRMFDIMKHRRYNEDDAGMVKFAGLRQVD
GKSLVLLKRNDEVIVLAIDVATARRMKRFSLGDEVLLTNKGTLKTKGRNR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1409
Plasmid name pXF-De_Donno
GenBank accession number NZ_CP020871.1
Genome size 35273 bp
Coordinate of oriT  [Strand] 5956..6058 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Xylella fastidiosa subsp. pauca De Donno [698414]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU