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oriT
Relaxosome
T4CP
Plasmid&Host
The information of the
oriT
region
oriT
DB accession number
100950
Name
oriT
_pZLS006-2
Sequence Completeness
core
oriT
length
38 nt
oriT
sequence
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC
IR (inverted repeat)
[2-8] [13-19] nt
(ACTTTAT..ATAAAGT)
Location of
nic
site
[27-28] nt
Conserved sequence flanking the
nic
site
GTG|TTA
Note
predicted by the
oriT
finder
L:2-8;R:13-19;D:27-28
Visualization of
oriT
structure
1
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5
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10
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15
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20
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25
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30
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35
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40
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45
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50
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55
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60
1
C
A
C
T
T
T
A
T
G
A
A
T
A
T
A
A
A
G
T
A
T
A
G
T
G
T
G
T
T
A
T
A
C
T
T
T
A
C
Reference
N/A
I. Information of Relaxase
ID
1020
Name
Putative relaxase of pZLS006-2
GenBank accession number
WP_000119405
Family
MOB
V
Length
420 aa
UniProt ID
_
PDB ID
_
Pfam
Mob_Pre [PF01076.18]
, Evalue: 1.70E-73, Aligned region: 1..193
Note
putative relaxase
Protein sequence
[Download]
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKE
IIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIA
YATVHNDEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERG
SDRKHIETAKFKKQTLEKEIDFLEKNLAVKKDEWTAYSDKVKSDLEVPAKRHMKSVEVPT
GEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDNDRLKQHVRNLMSTDMAREYK
KLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSLIYESTKEFLK
ERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL
Reference
N/A
II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A
N/A
Information of plasmid
ID
1408
Plasmid name
pZLS006-2
GenBank accession number
NZ_CP020860.1
Genome size
19851 bp
Coordinate of
oriT
[Strand]
16794..16831
[-]
Drug resistance
tetracycline resistance
Heavy-metal resistance
_
Virulence factor
_
Xenobiotic degradation
_
Host bacterium [NCBI Taxonomy ID]
Lactobacillus salivarius
ZLS006 [
1624
]
Reference
N/A