oriTDB
The information of the oriT region
oriTDB accession number 100948
Name oriT_pVISLISI_2  insolico
Sequence Completeness intact
oriT length 239 nt
oriT sequence AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATT ATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA CCACTTAACGACTTGATGAATTTTACTTTATCCTATAAAGTAAAATGTAAGAAAGGCGTT ATCTTTCGAAGAAAGCGTGGTGGGATTGAATGAGCGAACAAAACACATTTGTGGCTAGC
IR (inverted repeat)IR1: [52-59] [61-68] nt  (TTGGGGAT..ATCCCCAA)
IR2: [94-98] [104-108] nt  (TGGCT..AGCCA)
Location of nic site [115-116] nt
Conserved sequence flanking the
  nic site 		TGCTTG|CCA
Note predicted by the oriTfinder
L:52-59;R:61-68;L:94-98;R:104-108;D:115-116
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1018
Name Rlx_pVISLISI_2 insolico
GenBank accession number WP_084944766
Family MOBP
Length 336 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.10E-82, Aligned region: 8..242
Note putative relaxase
Protein sequence [Download] MATTKISATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKATRELYDKTDGNQGHVIIQ
SFKPGEVTPEQCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGLKFNNN
KQALRNVRDFNDEVCMKHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDKIREAI
DQSQATNMDEFKDHLNQHGIEIERVTPKSITYRHLAEDKKVRGRKLGEDYNKGGIEDGFE
RQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSDWDQFAQDTNELERSRQAAES
ARLADEKARRDREERERAKQASRRIINNDRDHGLEL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1406
Plasmid name pVISLISI_2
GenBank accession number NZ_CP020736.1
Genome size 6453 bp
Coordinate of oriT  [Strand] 3648..3886 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus lugdunensis VISLISI_27 [28035]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU