oriTDB
The information of the oriT region
oriTDB accession number 100946
Name oriT_pLd2  insolico
Sequence Completeness intact
oriT length 417 nt
oriT sequence CCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGACGAAAATCGTCTCTTTTTTTCTT CTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATCAAATGGGCATTT GGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTT CCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAG CTTGCAGTATTTCTGGTTTTATATGGTCTATTTTGTTATAATGATTGTAACCGAATAGGG CGCAATGCTTATTACAAAATCAATGACAAAGGGCGATTGAGGAATGAGCGCTGGGGCATT TTATCTTTGAGGAGGCTATTTATGGATCAAAAAGAAGTATCACAAAATCAAACAAAG
IR (inverted repeat)IR1: [161-173] [177-189] nt  (AAAAGGGGAAAGT..ACTTCCCCCTTTT)
IR2: [195-209] [222-236] nt  (CACATTGTAATACAA..TTGTATTACAATGTG)
Location of nic site [244-245] nt
Conserved sequence flanking the
  nic site 		CTTG|CA
Note predicted by the oriTfinder
L:161-173;R:177-189;L:195-209;R:222-236;D:244-245
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1016
Name Relaxase_pLd2 insolico
GenBank accession number WP_086383686
Family MOBP
Length 410 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 9.40E-75, Aligned region: 9..280
Note putative relaxase
Protein sequence [Download] MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGI
DPFIAKEQFDVIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLY
PNHQSAVYTHLDGKNHVLHNHIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWH
ILEPPKERQTETEKELIAKNEYSYMDDLRERINKSLQDVSVSSYETFKERLSDNGVILSE
RGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENRARQNEFRAVEQREPAITPLE
RDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQFAGRVPELTQRVTRKLKQTK
EKILDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1404
Plasmid name pLd2
GenBank accession number NZ_CP020606.1
Genome size 15218 bp
Coordinate of oriT  [Strand] 9180..9596 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Lactococcus lactis subsp. lactis FM03 [44688]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU