oriTDB
The information of the oriT region
oriTDB accession number 100936
Name oriT_pASM4  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGCGAGTGTCAGTGAAATGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTCAGCAGAATATGTGATACAAGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1006
Name MobA_pASM4 insolico
GenBank accession number WP_012565229
Family MOBP
Length 499 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.80E-16, Aligned region: 49..247
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPSGQREKLMASFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPKAKQEAAEAITRGLLA
LASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAEIESAAAEYRRDAESRIQRAREICKSGTERKREENQRRHPRPRPETVLSHEPAHERHG
AHGQPDVADHRPGLRAADRLERGHSVVAGAADTRQLHDHPGAEEHAGHAVREEQRRAALD
LRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERSAERARHGLEQAGAEFERAAAPVVERLNAVELHREQERVVQHQ
KALELERSQRQRTYNSPSL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1394
Plasmid name pASM4
GenBank accession number NZ_CP019843.1
Genome size 4667 bp
Coordinate of oriT  [Strand] 679..852 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter cloacae R11 [550]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU