oriTDB
The information of the oriT region
oriTDB accession number 100926
Name oriT_pCFSAN001297_01  insolico
Sequence Completeness intact
oriT length 355 nt
oriT sequence ACTCCGATACGTTGCCCTCCGAACGGTATTCAAGGTCGATTTTTTGCGCTTCGGTCACTC TTAAACTGATAGATGGCATAGGTTTCCTTTGTGTAATACCGATGTAATACATACAAATCT AGCATATATGCGGATTAATTCCATATGTGTAATACGTTGCGTATTACACATCAAAACACA AATTAGAATAATTTGTTTTGTTTTCAAGCATTTACGATGAAAATCGTAATTGCGTATGGT GTATAGCCGTTAAGGGATACCATACCACGCCTTTTTTAAGGGAGAAACCGGTGTTAAGTG CAAGTGAATCGCTCAAAAAGCGTTCACATTCACCACTTTCATGCTTGCATGAAAG
IR (inverted repeat)IR1: [145-155] [161-171] nt  (ATGTGTAATAC..GTATTACACAT)
IR2: [208-218] [223-233] nt  (GCATTTACGAT..ATCGTAATTGC)
IR3: [336-344] [347-355] nt  (CTTTCATGC..GCATGAAAG)
Location of nic site [242-243] nt
Conserved sequence flanking the
  nic site 		GGTGT|ATAGC
Note predicted by the oriTfinder
L:145-155;R:161-171;L:208-218;R:223-233;L:336-344;R:347-355;D:242-243
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 997
Name Relaxase_pCFSAN001297_01 insolico
GenBank accession number WP_023223526
Family MOBF
Length 969 aa
UniProt ID _
PDB ID _
Pfam TrwC [PF08751.10], Evalue: 3.60E-79, Aligned region: 12..288
AAA_30 [PF13604.5], Evalue: 2.90E-40, Aligned region: 475..659
Viral_helicase1 [PF01443.17], Evalue: 1.10E-07, Aligned region: 495..654
Viral_helicase1 [PF01443.17], Evalue: 2.30E-06, Aligned region: 780..897
UvrD_C_2 [PF13538.5], Evalue: 2.10E-09, Aligned region: 849..896
Note putative relaxase
Protein sequence [Download] MLNITTITRQRVDKVVDYYTDGADDYYAKDGNAMQWQGAGAEELGLTGEVEQQRFAKLLD
GKVTDDISVMRKTANSESKERLGYDLTFSAPKGVTLQALVSGDKRIIEAHDRAVAKAIEE
AERLALGRFTVNKKTHVENTNKLIVAKFRHETSRELDPELHTHAFVMNLTKTSDGKWRSL
TNDGIVNSLTLLGNVYKSELARDLELAGYNLRYDRNGTFDLAHFTPEQTAHFSQRSQQIE
AELAKDGLSRETASHEQKNAAALKTRKSKGEVDRDVLYEGWKNRAKELQIDFDSREWKGA
ANDDIARNTQPAALEKPIEYQADKVMTFAIRSLTERQSVITERELMDVAMKHGYGRLTLD
DIRAARERAITSGNLIKEEATYAAATTNKKQQNVAMTREQWVTELVKAGRNKDEARKLVD
KGITNGRLVQQKPRFTTQLAQQRERNILKMEREGRGKIQTPYTREFSEGWLASRTLKPEQ
LKAVMGIIHTPNQFISVHGFAGTGKSYMTKSAADFLKEQGVHVTSLAPYGSQVKALQAEG
LESRTLQSFLRASDKKIGPGSVVFIDEAGVIPARQMEETMRVIRDAGARAVFLGDTKQTK
AVEAGKPFEQLIKAGMETAYMKDIQRQKDPELLKAALNAAEGKIKASLTHVTSIVEEKNH
DQRYRRIVGDYVAMPPTDRANALIITGTNDSRKKINAYIQAELGLKGQGINYPLLNRLDT
TQAQRQHSKYYEKGAVIIPERDYSNGLKRGAVYTVLDTGPGNKLTVSDGSGDTIAFSPAR
FSKLSVYSVEKTELAVGDQVRITRNDAHLDLANGDRFKVKGVQSGEVLLENEKGRLVKID
ANKPMYLGLAYASTVHSAQGLTCDKVFINMDTRSLTTAKDVYYVAVTRAKHEAVIYTDDE
KKLDKAASREGFKTAALELEQLKRYAKEQQHDAREKGRDKTEPTQEKDNAKRKGKGHDKN
NDERAFTSL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1385
Plasmid name pCFSAN001297_01
GenBank accession number NZ_CP019200.1
Genome size 34175 bp
Coordinate of oriT  [Strand] 12523..12877 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica 315 [1124958]
Reference
[1] Timme RE et al (2013) Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp enterica inferred from genome-wide reference-free SNP characters. Genome Biol Evol. 5(11):2109-23. [PMID:24158624]

Microbial Bioinformatics Group in MML, SJTU