oriTDB
The information of the oriT region
oriTDB accession number 100917
Name oriT_pECAZ146_4  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ATCATTTGGCATCAGTGAGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 988
Name Putative relaxase of pECAZ146_4 insolico
GenBank accession number WP_053892877
Family MOBP
Length 532 aa
UniProt ID A0A1U9TM64
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.40E-18, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGARVLRGAPEEVRELIDATPFAKKYTSGVLSF
AEQTLPPGERERVMESFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELASGKRL
QPYYDRADRPRINAWQTLVNHHYGLHDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEA
LYHAGALKTRQDVTEALTAAGFEVVRTTRSSISIADPEGGRNLRLKGALYEQSFTNGDRL
REETERACRLYREHAEQRVQEARSVCRQGTELKRAENQRRYQRTHSSGERTTGDAEQCRE
RAVQRHRERTGPAAGRAALEAGQRADTVPVADGALRHGRDFSGVMGADSVAGKPDCGEHP
GYQGPGRDAGETPGKNMGCDVSRGQEREISSVAVRGEGGKQLDGGEEERSKTGQGVSEYD
RAGNALTERLRAIAAGLYAAAERLGERLHGFAAYVRADTTGERATEGTVRRLESAGAEIS
RAGGPLESVIYHEQQIRDEQERQARLERERARSWHEEQEREARVWRGPSIGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1376
Plasmid name pECAZ146_4
GenBank accession number NZ_CP018987.1
Incompatibility group ColRNAI
Genome size 6994 bp
Coordinate of oriT  [Strand] 6252..6334 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli Ecol_AZ146 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU