oriTDB
The information of the oriT region
oriTDB accession number 100915
Name oriT_pEC867_KPC  insolico
Sequence Completeness intact
oriT length 179 nt
oriT sequence AGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGC TTAACATGGTAAATCGGAGTGGGGATTCAGGAAAGTGCTTCATGTGGCAGGGAGAAAATG CTGCTGTGGGGCGTAAGTGCGAAATGCAGATCCCGGTGAAATGACGCCTCCTCGCTCAC
IR (inverted repeat)[8-15] [19-26] nt  (TTCGGGGC..GCCCTGAA)
Location of nic site [59-60] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:8-15;R:19-26;D:59-60
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 986
Name Putative relaxase of pEC867_KPC insolico
GenBank accession number WP_034169352
Family MOBP
Length 498 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 4.50E-17, Aligned region: 42..273
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSF
AEQDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLS
LASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRRHPRPRPEAVLSHEPTHERDA
AYDQPDVADHSPGLRATDRLERGHSVVAGATDTRQLHDHPGTEEHAGHAFREEQRRPAHD
LRGGETPLREGEPGSGKIRRGFELDDTGGEIAHDGTGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWAYATGERGAERARHGLEQAGAEFERSAAPIVARLNGIEAHREQERAAQHQ
KALELERSQRQKGFELGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1374
Plasmid name pEC867_KPC
GenBank accession number NZ_CP018981.1
Genome size 14029 bp
Coordinate of oriT  [Strand] 7645..7823 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli Ecol_867 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU