oriTDB
The information of the oriT region
oriTDB accession number 100901
Name oriT_pKp_Goe_641-4  insolico
Sequence Completeness intact
oriT length 181 nt
oriT sequence TTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTG GCTAAATATGTTACGGCGGAGTGGTAATGTATGAAAGTGCTTCATGTGGGAAGGGGAAAA TGTGGCTGACGGGCGTAAGTGCAACATGCTGGTAAAGGTGAAATGACGCCTCCTCGCTCA C
IR (inverted repeat)[10-17] [21-28] nt  (TTCGGGGC..GCCCTGAA)
Location of nic site [61-62] nt
Conserved sequence flanking the
  nic site 		CTGG|CTAA
Note predicted by the oriTfinder
L:10-17;R:21-28;D:61-62
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 972
Name Nuclease_pKp_Goe_641-4 insolico
GenBank accession number WP_071890506
Family MOBP
Length 502 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 5.90E-16, Aligned region: 41..278
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYAKKYTSGVLSF
AEAELLPGQREQIMASFERVLMPGLDKDQYSILWVEHTDKGRLELNFLIPNTELLTGKRL
QPYYDRADRPRIDAWQTVVNGRLGLHDPNAPENRRLLVTPSALPETKLEAAQAITRGLLA
LASSGELKTREDVTGALTAAGFEVVRTTKNSISIADPDGGRNIRLKGAIYEQSFSAGEGL
GAAIESAAAEYRRDAESRIQRAREICKSGTERKREENQRRHQRPRAGYDRGDAVEPPERA
AYGRPDVADHHPGLGTADRHEREHSVVAGAADHRELPDYPGAGADAGHVVGEKPRRSAVA
LRGEETVLRQSEPESGSLRGGRELDGTGEEIAHDGTGKTVADRIRAATSGLLAKAGRVGE
RLRGMAEDVWSYATGERGAERARHALESAGGELEQAVTAFEPVVQRHEMAVAAERAYEQR
QHEKELAEARSRQRSYNGPTLG
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1360
Plasmid name pKp_Goe_641-4
GenBank accession number NZ_CP018740.1
Genome size 4052 bp
Coordinate of oriT  [Strand] 3860..4040 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Klebsiella pneumoniae Kp_Goe_121641 [573]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU