oriTDB
The information of the oriT region
oriTDB accession number 100900
Name oriT_pKp_Goe_641-2  insolico
Sequence Completeness core
oriT length 106 nt
oriT sequence AGTACGGGACAAGATGTGTTTTTGGAGTACCGCCGACACGCGGCGGCCGTCCAAAAACGT CTTGGTCAGGGCAAGCCCCGACACCCCCTAACGAGGTTAGCTATCT
IR (inverted repeat)[18-35] [41-58] nt  (GTTTTTGGAGTACCGCCG..CGGCGGCCGTCCAAAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:18-35;R:41-58
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 971
Name Putative relaxase of pKp_Goe_641-2 insolico
GenBank accession number WP_074513113
Family MOBP
Length 659 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.30E-30, Aligned region: 13..334
Note putative relaxase
Protein sequence [Download] MVIPKIIEGRRDKKSSFGQLIKYMADKPSQELTDTVQPTPETALAVKSDMFEGLNNYLTR
KQKVISTPVDVEPGVQRVVVGDVTCQYNTFSLDGAAQEMNSVSQQSTRCKDPVMHYVLSW
PDYEKPNDDQVFDSVKFTLASMGMSDHQYVAAIHRDTDNLHVHVAVNRINPQTYKAASSS
FTKDTLHQACRLLELKNGWSHSNGAYVVNDRQQIVRNPHSKKERGNWRSLDRINKMENKE
VVETLYRYIVGDEQVGGSRQNLIHVSAGLREAKSWDDVHKTFADIGLRVEKAQGKKGYVI
THEHQNQKTAVKASLVFNKAQYTLKSMEERFGEYQPSHIEPAKVSVFKTAYTPGAYRRDA
NKRLQRKIERAEERMLLKGRYRAYRNNLPIYSPDKDRIADEYRKIAQHTRLVKNNVRHSV
SDPHTRKLMYNLAEFKRLQAVANLRLSLREERNGFRAANPRLSYREWVEQEALKGDKAAL
SQMRGFAYSSRKKEKYKQQLVEQIGFNRTFNAITSHDRDDVAVMASARHGVKPRLLKDGT
VIFERDGKPVAADRGHIVLTESNGIDKEKTADLAIALTIAGKAKSVRVDGDGEFKELCCN
RIVDAAVNHNHPVAQGITFTDAAQQAYAQNEKHRLIREQNNSKNEMQFRSESDDKFNPK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1359
Plasmid name pKp_Goe_641-2
GenBank accession number NZ_CP018736.1
Incompatibility group IncL/M(pOXA-48)
Genome size 63589 bp
Coordinate of oriT  [Strand] 42615..42720 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Klebsiella pneumoniae Kp_Goe_121641 [573]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU