oriTDB
The information of the oriT region
oriTDB accession number 100883
Name oriT_pCAV1752-3851  insolico
Sequence Completeness intact
oriT length 186 nt
oriT sequence GGTTTTTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTA TACTGGCTTAATATGATAAATCGAAGTGGTAATTCGGGAAAGTGCTTCATGTGGCAGGGG AAAAATTCAGCTGCGGGGCGTAAGTGCAAAATGCAGGTGGTGATGACATGACGCCTCCTC GCTCAC
IR (inverted repeat)[15-22] [26-33] nt  (TTCGGGGC..GCCCTGAA)
Location of nic site [66-67] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:15-22;R:26-33;D:66-67
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 954
Name Nuclease_pCAV1752-3851 insolico
GenBank accession number WP_074184816
Family MOBP
Length 508 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 4.20E-15, Aligned region: 49..247
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEIRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGKRL
QPYYDRADRPRIDAWQTVVNGRLGLHDPNDPENRRALVTPSGLPETKQEAAETITRGLLM
LASSGELKTRDDVTGALTAAGFEVVRTTKNSISIADPDGGRNIRLRGAIYEQSFNGLEGL
RGEIESTAAAYRREAESRIQQARERCQIGTERKREENQRRHQRPRTGDERGDAVEPAERA
ANGRADVADHHHGVRAAVRQPERGAVVPGEPDSGEPGGNQAAERYAVETADADVGRDLSG
KPQRTVSGAAGGDESRNGPEGGQQDAERGEAGTGVEQNDGTGKTIAERVRAATAGLLEKA
GRVGERLRGMAEDVWSYATGERGAERARVGLEQAGAEFERAAAPVIDRLNEIEQQRYGQT
TEKEPEKTADLVPERQRTLSHGDREYGD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1342
Plasmid name pCAV1752-3851
GenBank accession number NZ_CP018357.1
Genome size 3851 bp
Coordinate of oriT  [Strand] 3018..3203 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Klebsiella oxytoca CAV1752 [571]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU