oriTDB
The information of the oriT region
oriTDB accession number 100878
Name oriT_pVaf-108-3  insolico
Sequence Completeness core
oriT length 43 nt
oriT sequence GGATCCAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTGC
IR (inverted repeat)[22-27] [32-37] nt  (CGTCGC..GCGACG)
Location of nic site [11-12] nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:22-27;R:32-37;D:11-12
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 949
Name TraA_pVaf-108-3 insolico
GenBank accession number WP_065284726
Family MOBQ
Length 1193 aa
UniProt ID A0A1B1CP89
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 3.70E-74, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 5.20E-58, Aligned region: 381..570
AAA_19 [PF13245.5], Evalue: 9.20E-12, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 3.40E-05, Aligned region: 669..737
Note putative relaxase
Protein sequence [Download] MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMEFEREARTIDYSRKQGLLHEEFVIPEDAP
DWLRSMLADRSVSGASEAFWNKVEAFEKRSDAQLAKDVTIALPIELSADQNIALVRDFVE
RHITAKGVVADWVFHDAPGNPHIHLMTTLRPLTEDGFGAKKVAVLGPDGNPVRNDAGKIV
YELWAGSADDFNAFRDGWFACQNRHLALAGFDIRIDGRSFEKQGIELTPTIHLGVGTKAI
ERKGDSGEEKVALERLELQEERRAENARRIQRNPEIVVDLITREKSVFDERDIAKVLYRY
IDDAALFQNLMARLLQSPQTLRLDRERMDLVTGVRAPAKYTTRELIRLEAQMANQAIWLS
QRSSHRVNRTVLSGIVSRHDRLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGGALAGKAADGLEKEAGIASRTLSAWELRWDQERDRLDEKSVFVLDEAGMV
SSRQMARFVEAVTLSGAKLVLVGDPEQLQPIEAGAAFRAIAERIGYAELETIYRQREQWM
RDASLDLARGNVSAALDAYAQRDLVRTGWTRDEAITALIAEWDHEYDPAKSTLILAHRRV
DVRLLNEMARSKLVERGLIEAGHAFKTEDGTRQFAAGDQIVFLKNEGSLGVKNGMLALVV
DAQPGRIVAEIGNGEDRRRVVVEQRFYANVDHGYATTVHKSQGATVDRVKVLASSTLDRH
LSYVAMTRHRETAELYVGLEEFAQRRGGVLIAHGEAPYEHKPGNRDSYYVTLGFANGQER
TVWGVDLARAMDASDSRIGDRIGLKHVGSQRVTLPNGTEVDRNSWKVVPIQELAMARLHE
RLSRAGSKETTLDYQDASHYRAALRFAEARGLHLMNVARTIAHDQLQWTVRQSSKLAELG
ARLVAVAAKLGLGGAKSTVSTTSVIKEAKPMVFGTTTFPRSIGQAVEDKLSADPGLKASW
QEVSARFHHVFADPQAAFKAVNVDAMLANGTVAATTIVRIAEQPESFGALKGKTGLFAGS
AEKQARDTALVNAPALARDLQGFIAKRAAAARRYEDEERAVRAQLSLDIPALSASGKQVL
ERVRDAIDRNDIPAGLEFALADKMVKAELEGFAKAVSERFGERTFLPLAAKTADGKAFEV
ASAGMQPAQKNELRSAWDTIRTVQQLAAHERTAVALKQAEAIRQTQTKGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1337
Plasmid name pVaf-108-3
GenBank accession number NZ_CP018231.1
Genome size 339300 bp
Coordinate of oriT  [Strand] 38985..39027 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Rhizobium leguminosarum Vaf-108 [384]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU