oriTDB

The information of the oriT region

oriTDB accession number	100878
Name	oriT_pVaf-108-3
Sequence Completeness	core
oriT length	43 nt
oriT sequence	GGATCCAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTGC
IR (inverted repeat)	[22-27] [32-37] nt (CGTCGC..GCGACG)
Location of nic site	[11-12] nt
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:22-27;R:32-37;D:11-12

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGATCCAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTGC

Reference
N/A

I. Information of Relaxase

ID	949
Name	TraA_pVaf-108-3
GenBank accession number	WP_065284726
Family	MOB_Q
Length	1193 aa
UniProt ID	A0A1B1CP89
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 3.70E-74, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 5.20E-58, Aligned region: 381..570 AAA_19 [PF13245.5], Evalue: 9.20E-12, Aligned region: 386..513 Viral_helicase1 [PF01443.17], Evalue: 3.40E-05, Aligned region: 669..737
Note	putative relaxase
Protein sequence [Download]	MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMEFEREARTIDYSRKQGLLHEEFVIPEDAP DWLRSMLADRSVSGASEAFWNKVEAFEKRSDAQLAKDVTIALPIELSADQNIALVRDFVE RHITAKGVVADWVFHDAPGNPHIHLMTTLRPLTEDGFGAKKVAVLGPDGNPVRNDAGKIV YELWAGSADDFNAFRDGWFACQNRHLALAGFDIRIDGRSFEKQGIELTPTIHLGVGTKAI ERKGDSGEEKVALERLELQEERRAENARRIQRNPEIVVDLITREKSVFDERDIAKVLYRY IDDAALFQNLMARLLQSPQTLRLDRERMDLVTGVRAPAKYTTRELIRLEAQMANQAIWLS QRSSHRVNRTVLSGIVSRHDRLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA WEAAGYRVVGGALAGKAADGLEKEAGIASRTLSAWELRWDQERDRLDEKSVFVLDEAGMV SSRQMARFVEAVTLSGAKLVLVGDPEQLQPIEAGAAFRAIAERIGYAELETIYRQREQWM RDASLDLARGNVSAALDAYAQRDLVRTGWTRDEAITALIAEWDHEYDPAKSTLILAHRRV DVRLLNEMARSKLVERGLIEAGHAFKTEDGTRQFAAGDQIVFLKNEGSLGVKNGMLALVV DAQPGRIVAEIGNGEDRRRVVVEQRFYANVDHGYATTVHKSQGATVDRVKVLASSTLDRH LSYVAMTRHRETAELYVGLEEFAQRRGGVLIAHGEAPYEHKPGNRDSYYVTLGFANGQER TVWGVDLARAMDASDSRIGDRIGLKHVGSQRVTLPNGTEVDRNSWKVVPIQELAMARLHE RLSRAGSKETTLDYQDASHYRAALRFAEARGLHLMNVARTIAHDQLQWTVRQSSKLAELG ARLVAVAAKLGLGGAKSTVSTTSVIKEAKPMVFGTTTFPRSIGQAVEDKLSADPGLKASW QEVSARFHHVFADPQAAFKAVNVDAMLANGTVAATTIVRIAEQPESFGALKGKTGLFAGS AEKQARDTALVNAPALARDLQGFIAKRAAAARRYEDEERAVRAQLSLDIPALSASGKQVL ERVRDAIDRNDIPAGLEFALADKMVKAELEGFAKAVSERFGERTFLPLAAKTADGKAFEV ASAGMQPAQKNELRSAWDTIRTVQQLAAHERTAVALKQAEAIRQTQTKGLSLK

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1337
Plasmid name	pVaf-108-3
GenBank accession number	NZ_CP018231.1
Genome size	339300 bp
Coordinate of oriT [Strand]	38985..39027 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Rhizobium leguminosarum Vaf-108 [384]

Reference
N/A