oriTDB
The information of the oriT region
oriTDB accession number 100877
Name oriT_pHSL2  insolico
Sequence Completeness intact
oriT length 190 nt
oriT sequence GTGGGGTAGGTATCTCCCAACCGTGAAGCGCGATCCGATGGGATTGAGCGTAACGGTTAA CATTAGCCGCCGCAAGGCTTATCCTGCCATACAGTAGATACCTACCCCACAAACAAAAAG CGGTGGCAACTGCCACCGCTCTAAATTCCACGTCGCCTCGATGCTGAGTGAACGTGGACG GTAAAAGCTA
IR (inverted repeat)IR1: [19-38] [39-58] nt  (AACCGTGAAGCGCGATCCGA..TGGGATTGAGCGTAACGGTT)
IR2: [117-128] [131-142] nt  (AAAGCGGTGGCA..TGCCACCGCTCT)
Location of nic site [86-87] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:19-38;R:39-58;L:117-128;R:131-142;D:86-87
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 948
Name VirD2_pHSL2 insolico
GenBank accession number WP_056379678
Family MOBP
Length 347 aa
UniProt ID A0A1L4A0K2
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.70E-06, Aligned region: 72..266
Note putative relaxase
Protein sequence [Download] MSDFDSSFEAGQLAALFKPKLTSDPNRRGADMLLRSLSSRRAGQGGSTRARLARVVSRAP
EVMVKVTGRPKGKNHAAAHFDYIGRKGDVPLETRDGDILTDKEDRAELARDWGDPVYWRD
NSTVAAVSMVFSMPSGTDPDKVLSAVREVARSEIGHEWDYVLALHTDTPRPHVHVTVAAR
GDTGRRFNPRPQTLHHYRERFAEELRARGVTAEATPRAARGVGRAGQSMALNRMRQRYMA
GTAPAPFANQKITAAARDQLAGRSTAPDFVVRGRQAWNETHRRYLAAAKRLEVSSDPADR
QLADQVREFVGAGRTPTIHERSVAAIERKRQNERSRDRDRSREGPER
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1336
Plasmid name pHSL2
GenBank accession number NZ_CP018223.1
Genome size 61559 bp
Coordinate of oriT  [Strand] 27601..27790 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Sphingomonas sp. JJ-A5 [1921510]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU