oriTDB

The information of the oriT region

oriTDB accession number	100876
Name	oriT_pMRSN346355_5.3
Sequence Completeness	intact
oriT length	84 nt
oriT sequence	GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTT AACCATTCGGCATCAGTGCGGATT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCCTGACCC)
Location of nic site	[56-57] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:56-57

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTT

61

AACCATTCGGCATCAGTGCGGATT

Reference
N/A

I. Information of Relaxase

ID	947
Name	MobC_pMRSN346355_5.3
GenBank accession number	WP_000955999
Family	Other
Length	107 aa
UniProt ID	_
PDB ID	_
Pfam	MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note	putative relaxase
Protein sequence [Download]	MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGARDDS

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1335
Plasmid name	pMRSN346355_5.3
GenBank accession number	NZ_CP018126.1
Incompatibility group	ColRNAI
Genome size	5310 bp
Coordinate of oriT [Strand]	1647..1730 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Escherichia coli MRSN346355 [562]

Reference
N/A